Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_A12
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0046 - 19585032-19585109,19585198-19585278,19585460-195855... 52 8e-07
03_05_0963 + 29252961-29252999,29253108-29253179,29253295-292533... 42 9e-04
07_03_1787 - 29515140-29515488,29517302-29517918 31 1.2
04_04_0432 + 25157722-25157950,25158045-25158659,25159298-251593... 31 1.6
07_03_1029 + 23379890-23380139,23380506-23381131 30 2.1
02_04_0588 + 24115314-24115570,24116722-24116971 30 2.1
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307... 30 2.8
10_02_0098 + 5286827-5287019,5287380-5287476,5287872-5287992,528... 29 5.0
>11_06_0046 -
19585032-19585109,19585198-19585278,19585460-19585501,
19586058-19586149,19586243-19586312,19587140-19587223,
19587696-19587770,19587878-19587949,19588082-19588331,
19590224-19590291,19590380-19590460,19590642-19590683,
19591240-19591331,19591425-19591494,19592322-19592405,
19592878-19592952,19593060-19593131,19593264-19593305
Length = 489
Score = 51.6 bits (118), Expect = 8e-07
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 9/186 (4%)
Frame = +3
Query: 261 KIVLASASPRRAELIENIGLKVSLCPSLFEENLVPNEFSKFSDFVEETALHKVLEVEKRL 440
K++L S+S R ++ +GL+ + + +E + E + V A K + RL
Sbjct: 14 KLILGSSSVARKHILTEMGLEFEVMTADIDEKSIRRENP--DELVTVLAEAKADAIMSRL 71
Query: 441 T-----GMGSAPDIVIGADTMVTLDGEMFGKPTSEAEAFVMLSRLSGRSHTVYTGVVVKT 605
G P ++I +D +V +G + KPT++ EA L SG SH G VV T
Sbjct: 72 NISDYQKEGDRPTLLITSDIVVVHEGIIREKPTTKEEARQFLKGYSG-SHVSTVGSVVVT 130
Query: 606 GEEIVKFTESTD---VQFGELDEQQIRGYIDTGEPMDKAGGYGIQ-GVGGTFVERVEGDY 773
K ES D V F ++ ++ I ID AGG ++ + FVE V G
Sbjct: 131 NLTTGKRLESLDKAEVYFHDIPDEIIENLIDERVVFRVAGGLLLEHPLTLPFVEAVVGSS 190
Query: 774 FTVVGL 791
+V+G+
Sbjct: 191 DSVMGI 196
Score = 51.6 bits (118), Expect = 8e-07
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 9/186 (4%)
Frame = +3
Query: 261 KIVLASASPRRAELIENIGLKVSLCPSLFEENLVPNEFSKFSDFVEETALHKVLEVEKRL 440
K++L S+S R ++ +GL+ + + +E + E + V A K + RL
Sbjct: 292 KLILGSSSVARKHILTEMGLEFEVMTADIDEKSIRRENP--DELVTVLAEAKADAIMSRL 349
Query: 441 T-----GMGSAPDIVIGADTMVTLDGEMFGKPTSEAEAFVMLSRLSGRSHTVYTGVVVKT 605
G P ++I +D +V +G + KPT++ EA L SG SH G VV T
Sbjct: 350 NISDYQKEGDRPTLLITSDIVVVHEGIIREKPTTKEEARQFLKGYSG-SHVSTVGSVVVT 408
Query: 606 GEEIVKFTESTD---VQFGELDEQQIRGYIDTGEPMDKAGGYGIQ-GVGGTFVERVEGDY 773
K ES D V F ++ ++ I ID AGG ++ + FVE V G
Sbjct: 409 NLTTGKRLESLDKAEVYFHDIPDEIIENLIDERVVFRVAGGLLLEHPLTLPFVEAVVGSS 468
Query: 774 FTVVGL 791
+V+G+
Sbjct: 469 DSVMGI 474
>03_05_0963 +
29252961-29252999,29253108-29253179,29253295-29253369,
29253500-29253583,29253676-29253745,29253842-29253933,
29254082-29254123,29254241-29254627
Length = 286
Score = 41.5 bits (93), Expect = 9e-04
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Frame = +3
Query: 261 KIVLASASPRRAELIENIGLKVSLCPSLFEENLVPNEFSKFSDFVEETALHKVLEVEKRL 440
K+VL S+SP R E++ ++G + ++ + +E + E K + V+ A K ++ +L
Sbjct: 13 KVVLGSSSPARREILADMGYEFTVMCADIDERAIRRE--KPEELVKALAEAKAEAIKLKL 70
Query: 441 TGMGSA-----PDIVIGADTMVTLDGEMFGKPTSEAEAFVMLSRLSG-RSHTVYTGVVVK 602
G SA P I+I +D ++ G + +P + EA + SG ++ V +V
Sbjct: 71 HGEDSAQERDQPTILITSDQVMVSKGMIRERPKGQEEAREFIKGYSGDKAFAVNYVLVTN 130
Query: 603 TGEEIVK-FTESTDVQFGELDEQQIRGYIDTGEPMDKAGG 719
K + ++ F + E I+ + G AGG
Sbjct: 131 LSNGASKGGWDIPEIYFHHIPEDFIQSVVKEGHMTCVAGG 170
>07_03_1787 - 29515140-29515488,29517302-29517918
Length = 321
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 710 SWRLWHPRRWRN--LCGAS*RRLFHCSWPTXIQTMLCTLQ 823
SW LW P RW L ++ HC P LC+LQ
Sbjct: 278 SWMLWDPHRWDRFPLSDPDASQVSHCPVPGKRSLTLCSLQ 317
>04_04_0432 +
25157722-25157950,25158045-25158659,25159298-25159380,
25159906-25159979,25160101-25160151,25160295-25160371,
25160856-25161595
Length = 622
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +3
Query: 546 MLSRLSGRSHTVYTGVVVKTGEEIVKFTESTDVQFGELDEQQIRGYIDTGEPMDKAGGYG 725
ML SG G V ++ F + F ++ Q GY+ +G + AGGY
Sbjct: 94 MLVGSSGGGRRTVAGDGVGEAPKLENFLDGNS--FSDVHGQAAGGYLYSGSAVGGAGGYS 151
Query: 726 IQGVGGTFVE 755
G GG +E
Sbjct: 152 NGGCGGGTIE 161
>07_03_1029 + 23379890-23380139,23380506-23381131
Length = 291
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 648 FGELDEQQIRGYIDTGEPMDKAGGYGIQGVGGTFVE 755
F ++ Q GY+ +G ++ AGGY G GG +E
Sbjct: 132 FSDVHGQAASGYLYSGSTVNGAGGYSNGGCGGGTIE 167
>02_04_0588 + 24115314-24115570,24116722-24116971
Length = 168
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 713 WRLW-HPRRWRNLCGAS*RRLFHCSWPTXIQTMLCTLQ 823
W LW HP+RW +LCG + C + +L LQ
Sbjct: 18 WALWNHPQRWVDLCGGGGGGVDPCRRMAQVSHVLKALQ 55
>12_02_0280 -
16729000-16729678,16729948-16730039,16730072-16730772,
16731033-16731144,16731961-16731970,16732954-16733663
Length = 767
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 213 LETKMLQPVMHVLKAKKIVLASASPRRAELIENIGLKVSLCPSLFEENLVPNEFSKFSD 389
L ++ + V + S +P +L++N+ L+V + + +L P+EF+KF D
Sbjct: 162 LANQVYKQVKDKFNCTSFLSVSKNPDVLKLLKNLLLEVQKKEIIIKSSLTPSEFTKFPD 220
>10_02_0098 +
5286827-5287019,5287380-5287476,5287872-5287992,
5288458-5288511,5288868-5288918,5289004-5289099,
5289709-5289807,5289989-5290111,5290666-5290809,
5290902-5290973,5291053-5291128,5291208-5291350,
5291453-5291561,5291629-5291816,5292045-5292134,
5292256-5292438,5293187-5293360,5293466-5293537
Length = 694
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +3
Query: 414 KVLEVEKRLTGMGSAPDIVIGADTMVTLDGEMFGKPTSEAEAFVMLSRLS-GRSHTVYTG 590
+V+ V +++ + + P+ L G K TSEAEAF +LS + T
Sbjct: 430 RVVSVGRKVEDLLANPESKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRITA 489
Query: 591 VVVKTGEEIVKFTESTDVQFGE 656
V K + +K S D + E
Sbjct: 490 VTAKHASDAIKDASSIDSEINE 511
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,885,489
Number of Sequences: 37544
Number of extensions: 391370
Number of successful extensions: 969
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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