Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A12
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   2.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   2.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.6  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 634 DSVNFTISSPVFTTTPVYTVCERPDN 557
           D VNF I +       + T CE PDN
Sbjct: 396 DDVNFRIMNANVNELILNTRCENPDN 421


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 634 DSVNFTISSPVFTTTPVYTVCERPDN 557
           D VNF I +       + T CE PDN
Sbjct: 396 DDVNFRIMNANVNELILNTRCENPDN 421


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 634 DSVNFTISSPVFTTTPVYTVCERPDN 557
           D VNF I +       + T CE PDN
Sbjct: 396 DDVNFRIMNANVNELILNTRCENPDN 421


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +3

Query: 339  SLFEENLVPNEFSKFSDFVEETALHKVLEVEKRLTGMGSAPDIVIGADTMVTLDGEMFGK 518
            SLF + +   +  ++S +VE T  H  +  +  +     +P I + A T  +L  ++   
Sbjct: 1330 SLFIKEVDRTDAGEYSCYVENTFGHDTVTHQLIVHAPPHSPQITLTATTTNSLTMKVRPH 1389

Query: 519  PTSEA 533
            PT  A
Sbjct: 1390 PTDNA 1394


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 316 PMFSISSARRGDALASTIFLAFKTCITGCNI 224
           P ++++ A+ G    +TIF+  K C   C +
Sbjct: 211 PAYNMTFAQNGPFNTTTIFVPVKPCPWICEL 241


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 582 YTGVVVKTGEEIVKFTESTDVQFGELDEQ 668
           YTG V+ T   I K +   DV++   D+Q
Sbjct: 129 YTGKVLWTPPAIFKSSCEIDVRYFPFDQQ 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,081
Number of Sequences: 438
Number of extensions: 4111
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)