Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A10
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    32   0.13 
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    28   1.6  
SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein homolog|S...    28   2.1  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   8.4  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 120 TSITLNDRFTLLSTAGTDRAAMRMKKTSYR--TSIPYTNPEHKKPFLD*PDR 269
           TS   ++R  LLS++      +R  K S+R  TS   +  +HK+PF + P+R
Sbjct: 183 TSPAFSERLKLLSSSNNFSPQLRSPKISHRLQTSATSSPLQHKRPFTNVPER 234


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 604 AQRGRPATRPTGRVLRSQQQKPVPSREQLDAELDQYM 714
           AQR     R   R L  +  KP+P+  + DAEL +Y+
Sbjct: 124 AQRAYRENRARERQLLLENGKPIPASLEEDAELPEYL 160


>SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 93

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +1

Query: 196 KRPTVHQYLTQTLNIRNRFLIDQIARKLEYQMKRATLXQRLG 321
           K  T++  +T+TLN+RN  LI  IA +   Q+ + T+ + LG
Sbjct: 43  KDHTINANITKTLNVRNEKLIAGIASQ---QVGKLTITKALG 81


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +1

Query: 169 LIAQLCA*KKRPTVHQYLTQTLNIRNRFLIDQIARKLEYQMKRATLXQRLGLGQAPFHQF 348
           LI +LC  K    + +   Q      R+L+ QI   L+Y  K+  + + L LG     + 
Sbjct: 115 LILELCEHKSLMELLRKRKQLTEPEVRYLMMQILGALKYMHKKRVIHRDLKLGNIMLDES 174

Query: 349 DN 354
           +N
Sbjct: 175 NN 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,215
Number of Sequences: 5004
Number of extensions: 52066
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)