Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A10
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0682 + 20667365-20667655                                         29   6.6  
03_04_0188 - 18241815-18242477                                         28   8.8  

>07_03_0682 + 20667365-20667655
          Length = 96

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 552 GKIQSRRRPAVRARHQGGAAR 614
           G+ Q+RRRP V AR  GG+ R
Sbjct: 22  GQSQTRRRPVVEARQGGGSRR 42


>03_04_0188 - 18241815-18242477
          Length = 220

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 458 IGQHRSVTCQWLVPGDHCGGSGAAE--AGRGQSGEDS 562
           +G H+S   +   PGDH G + AA+  A  G S EDS
Sbjct: 88  LGGHKSSHRKPPSPGDHYGAAAAAQQLASAGDSKEDS 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,235,392
Number of Sequences: 37544
Number of extensions: 466383
Number of successful extensions: 1935
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1930
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)