Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A10
         (898 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY358199-1|AAQ88566.1|  781|Homo sapiens CDH24 protein.                31   7.5  
AY260900-1|AAP20590.1|  781|Homo sapiens cadherin-24 protein.          31   7.5  
AB111888-1|BAC98376.1| 1322|Homo sapiens KIAA2036 protein protein.     30   9.9  

>AY358199-1|AAQ88566.1|  781|Homo sapiens CDH24 protein.
          Length = 781

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
 Frame = -2

Query: 525 APEPPQWSPGTSH*QVTERC*PI*IAVELSPANSSLDASVAEVTGAV*PHQALEGVPIIE 346
           APEPP ++    H  V E   P  +  ++S A+  LD+  + +  ++ PH   E    I+
Sbjct: 368 APEPPAFTQAAYHLTVPENKAPGTLVGQISAAD--LDSPASPIRYSILPHSDPERCFSIQ 425

Query: 345 LMEWCLTQSKPL-X*CRPLHLILQLSSDLVNQETVSYVQ 232
             E  +  + PL    R  H +  L+++L +    S VQ
Sbjct: 426 PEEGTIHTAAPLDREARAWHNLTVLATELDSSAQASRVQ 464


>AY260900-1|AAP20590.1|  781|Homo sapiens cadherin-24 protein.
          Length = 781

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
 Frame = -2

Query: 525 APEPPQWSPGTSH*QVTERC*PI*IAVELSPANSSLDASVAEVTGAV*PHQALEGVPIIE 346
           APEPP ++    H  V E   P  +  ++S A+  LD+  + +  ++ PH   E    I+
Sbjct: 368 APEPPAFTQAAYHLTVPENKAPGTLVGQISAAD--LDSPASPIRYSILPHSDPERCFSIQ 425

Query: 345 LMEWCLTQSKPL-X*CRPLHLILQLSSDLVNQETVSYVQ 232
             E  +  + PL    R  H +  L+++L +    S VQ
Sbjct: 426 PEEGTIHTAAPLDREARAWHNLTVLATELDSSAQASRVQ 464


>AB111888-1|BAC98376.1| 1322|Homo sapiens KIAA2036 protein protein.
          Length = 1322

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = -2

Query: 633 GSGGGAAALRHXXXXXXXXXXXATESSPDCPRPASAAPEPPQWSPG 496
           G GGG+A L               +  PDC RP    P P +   G
Sbjct: 658 GGGGGSAMLPPSTRALTPLPPQVCDGQPDCGRPGQVGPSPEEQGCG 703


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,952,801
Number of Sequences: 237096
Number of extensions: 2318310
Number of successful extensions: 7920
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7915
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)