Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A08
         (1094 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.39 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.39
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 205  PPPPPPPP 228
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.39
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 208  PPPPPPPP 231
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 205 PPPPPPPP 228
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 209 PPPPPPPP 232
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.0 bits (47), Expect = 4.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 205 PPPPPPPPP 231
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 23.0 bits (47), Expect = 4.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 205 PPPPPPPPP 231
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 205  PPPPPPPP 228
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 209  PPPPPPPP 232
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 541 PPXGAPXGGXPSXPP 585
           P  G P GG P  PP
Sbjct: 42  PSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 541 PPXGAPXGGXPSXPP 585
           PP G P G  PS  P
Sbjct: 46  PPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.153    0.520 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,077
Number of Sequences: 438
Number of extensions: 6810
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36752805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)