Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A07
         (1025 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    37   0.005
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.11 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.71 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = +3

Query: 375 PPPPXXKXXGGAP---PXXXXXXFLGGPXXXPXPPXXXGGXGXPPPXXXPP 518
           PPPP       AP   P       +GGP   P PP   G  G PPP   PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGA-GPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.80
 Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
 Frame = +3

Query: 375 PPPPXXKXXGGAPPXXXXXXFLG-GPXXXPXPPXXXGGXG----XPPPXXXPPP 521
           P PP     GG PP        G GP   P PP      G     P P   P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 29.5 bits (63), Expect = 0.80
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = -3

Query: 1023 PPPPPPPXGXXXXXXGXXXXGVGPPXXPXXVXXGGGGGGXFSXXXP 886
            PPPPPPP G           G GPP  P        GG  +    P
Sbjct: 761  PPPPPPPPGVA---------GAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
 Frame = +1

Query: 376 PPPPXXXXXGXP-----PRXXXXXLFWGAPXXXPXPPXXGGGXVPPPPXXXPPPXXFXG 537
           PPPP       P     P      +  G P   P P   G G   PPP   PPP    G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG---PPPPPPPPPAVSAG 788


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
 Frame = -1

Query: 521 GGGXXXGGGGTXPPPXXGGXGXXXGAPQKXXXXXXR---GGXPXXFXXGGGG 375
           GG    GGG   PPP  GG G   G   +          GG P  F  G GG
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
 Frame = +3

Query: 375 PPPPXXKXXGGAPPXXXXXXFLGGPXXXPXPPXXXGGXGXPPP--XXXPPP 521
           PPPP  +   G PP          P   P P     G    PP     PPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 24.6 bits (51), Expect(2) = 0.71
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +1

Query: 907  PPPPPPXXNXXGXXGGPHTXPXGPXXXXXRAXGGGG 1014
            PPPPPP  N  G    P      P     R+    G
Sbjct: 338  PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373



 Score = 23.4 bits (48), Expect(2) = 0.71
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 898 RKXPPPPPP 924
           +K PPPPPP
Sbjct: 308 KKRPPPPPP 316


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 1023 PPPPPPPXG 997
            PPPPPPP G
Sbjct: 9    PPPPPPPPG 17


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,181
Number of Sequences: 5004
Number of extensions: 40490
Number of successful extensions: 375
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)