Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A05
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   238   7e-64
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   237   1e-63
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    29   0.67 
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    28   2.0  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   3.6  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   3.6  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.2  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   8.2  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  238 bits (583), Expect = 7e-64
 Identities = 119/206 (57%), Positives = 146/206 (70%)
 Frame = +2

Query: 74  LGLSRXHWHXRRATGGXRAPIRKXXKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 253
           +G++R   H R ATG  RA  RK  K+ELGR  +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 254 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 433
           D+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + 
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120

Query: 434 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 613
           +G  KG K T          +S+   RK+ AR   +KV+ ALE QF  GRL A V+SRPG
Sbjct: 121 MG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPG 174

Query: 614 QCGRADGYILEGKELEFYLRKIKSKR 691
           Q GR DGYILEG+EL FYLR++  K+
Sbjct: 175 QSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  237 bits (581), Expect = 1e-63
 Identities = 119/206 (57%), Positives = 146/206 (70%)
 Frame = +2

Query: 74  LGLSRXHWHXRRATGGXRAPIRKXXKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 253
           +G++R   H R ATG  RA  RK  K+ELGR  +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 254 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 433
           D+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + 
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120

Query: 434 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 613
           +G  KG K T          +S+   RK+ AR   +KV+ ALE QF  GRL A V+SRPG
Sbjct: 121 MG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPG 174

Query: 614 QCGRADGYILEGKELEFYLRKIKSKR 691
           Q GR DGYILEG+EL FYLR++  K+
Sbjct: 175 QSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 668 DRTRVLCLLRCNHRRDHTDLGDSPRKPANAPCGIALLE 555
           D   + CLLR  H+RD  +  +  RK  N   G  LLE
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +2

Query: 167 PAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 346
           P  NT + PQ     RSR   T  R+L   +G  S  S  ++ +TR    V +AS+N L+
Sbjct: 530 PLQNTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLI 581

Query: 347 RTKTLVKNAIVVVDATPFRQWYE 415
              +   ++  V   TPF   +E
Sbjct: 582 SIISSKPSSSTVQRQTPFHSPFE 604


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = +2

Query: 389 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 568
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 569 FHTGRLLACVASR 607
                +LA +  +
Sbjct: 814 TDPQTILAILKQK 826


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 155  ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 307
            EL    +N  +  Q+   + S    T YRA+ LDTG+     E +  K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 272 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 445
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309

Query: 446 K 448
           +
Sbjct: 310 Q 310


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 411 YHCLNGVASTTTIAFLTRVFVRTNS 337
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,778
Number of Sequences: 5004
Number of extensions: 48572
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)