Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_A03
(1002 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.36
01_03_0005 + 11568545-11569119,11569179-11569191 33 0.47
11_06_0016 - 19284810-19284926,19285527-19286879 31 1.1
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 30 3.3
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 30 3.3
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 30 3.3
07_01_0080 + 587674-588510 30 3.3
03_01_0515 - 3864796-3865425 29 4.4
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 29 5.8
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 29 5.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.8
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 33.1 bits (72), Expect = 0.36
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +1
Query: 418 GGXASSXRXXXPPXPXACGGPXXAXXXAGIRXPPXPGDGAGXXPGAXPP 564
GG PP P GG G+ PP P AG G PP
Sbjct: 1128 GGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPP 1176
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 32.7 bits (71), Expect = 0.47
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 409 GXRGGXASSXRXXXPPXPXACGGPXXAXXXAGIRXPPXPGDGAGXXPG 552
G GG + PP P + GG + GI PP G G G G
Sbjct: 79 GGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGG 126
>11_06_0016 - 19284810-19284926,19285527-19286879
Length = 489
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 833 PPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPP 964
PP R P P + GA P PPP P P PP
Sbjct: 52 PPLHPVGDRAIHPPMPPASAAAGDGAAPDQEPPPSPPPPPPPPP 95
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 872 PAPGSGXXPRXGAXPXXXPPPGAXPXPXGPP 964
P G+G P P PPPGA P P PP
Sbjct: 45 PPGGNGPVPSSIRAPQA-PPPGARPFPGSPP 74
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 872 PAPGSGXXPRXGAXPXXXPPP--GAXPXPXGPP 964
P PGSG P GA PPP G+ P P PP
Sbjct: 6 PNPGSGY-PYGGAGGYGAPPPPYGSSPAPSAPP 37
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 872 PAPGSGXXPRXGAXPXXXPPP--GAXPXPXGPP 964
P PGSG P GA PPP G+ P P PP
Sbjct: 6 PNPGSGY-PYGGAGGYGAPPPPYGSSPAPSAPP 37
>07_01_0080 + 587674-588510
Length = 278
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 833 PPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPP 964
PP G P P P G+ P PPP P P PP
Sbjct: 79 PPRLGGDGMFRRPPPPPP-PPPSSGSPPPPPPPPPPPPPPPPPP 121
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 4.4
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +2
Query: 812 PXXRXXXPPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGP 961
P PP G P P P P PPP A P P P
Sbjct: 55 PSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPP 104
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 29.1 bits (62), Expect = 5.8
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = -1
Query: 963 GGPXGXGXAPGGGXXXGXAPXRGXXPDPGAGXXXXRAXPXXXGGXXXRXXGXRG 802
G G G GGG G G G G R P GG G RG
Sbjct: 11 GRGRGRGGGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGGGGGRGYEPGGGRG 64
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 29.1 bits (62), Expect = 5.8
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +2
Query: 881 GSGXXPRXGAXPXXXPPPGAXPXPXGPPXXXXXRXG 988
G G P A PPPG P P GPP R G
Sbjct: 34 GGGAPPYRPASGFVWPPPGMTPRP-GPPQPQYPRPG 68
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 5.8
Identities = 18/66 (27%), Positives = 20/66 (30%)
Frame = +2
Query: 803 PRXPXXRXXXPPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPPXXXXXR 982
P P PP + P P G P A PPP P P PP +
Sbjct: 316 PPPPKPAAAAPPPPP-PPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKK 374
Query: 983 XGARXP 1000
G P
Sbjct: 375 GGPPPP 380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.143 0.491
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,707,828
Number of Sequences: 37544
Number of extensions: 264392
Number of successful extensions: 1230
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2940399740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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