Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_A03
(1002 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 38 0.015
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 38 0.015
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 38 0.015
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 32 0.74
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 31 0.98
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 31 0.98
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 0.98
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 31 0.98
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.98
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.98
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.98
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.0
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 6.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 6.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 6.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 6.9
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 6.9
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 6.9
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 28 9.1
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 28 9.1
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 28 9.1
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 28 9.1
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 37.5 bits (83), Expect = 0.015
Identities = 21/66 (31%), Positives = 22/66 (33%)
Frame = +2
Query: 803 PRXPXXRXXXPPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPPXXXXXR 982
P P PP G P P G P G P PPPG P P PP +
Sbjct: 726 PPPPPPPGGLPPITGGPP----PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Query: 983 XGARXP 1000
G P
Sbjct: 782 GGPPPP 787
Score = 32.7 bits (71), Expect = 0.42
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +2
Query: 833 PPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPPXXXXXRXGARXP 1000
PP P P G P G P PP G P GPP G P
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 872 PAPGSGXXPRXGAXPXXXPPPGAXPXPXGPP 964
P P G P G P PP G P GPP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPP 743
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 37.5 bits (83), Expect = 0.015
Identities = 21/66 (31%), Positives = 22/66 (33%)
Frame = +2
Query: 803 PRXPXXRXXXPPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPPXXXXXR 982
P P PP G P P G P G P PPPG P P PP +
Sbjct: 726 PPPPPPPGGLPPITGGPP----PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Query: 983 XGARXP 1000
G P
Sbjct: 782 GGPPPP 787
Score = 32.7 bits (71), Expect = 0.42
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +2
Query: 833 PPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPPXXXXXRXGARXP 1000
PP P P G P G P PP G P GPP G P
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 872 PAPGSGXXPRXGAXPXXXPPPGAXPXPXGPP 964
P P G P G P PP G P GPP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPP 743
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 37.5 bits (83), Expect = 0.015
Identities = 21/66 (31%), Positives = 22/66 (33%)
Frame = +2
Query: 803 PRXPXXRXXXPPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPPXXXXXR 982
P P PP G P P G P G P PPPG P P PP +
Sbjct: 309 PPPPPPPGGLPPITGGPP----PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK 364
Query: 983 XGARXP 1000
G P
Sbjct: 365 GGPPPP 370
Score = 32.7 bits (71), Expect = 0.42
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +2
Query: 833 PPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPPXXXXXRXGARXP 1000
PP P P G P G P PP G P GPP G P
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 872 PAPGSGXXPRXGAXPXXXPPPGAXPXPXGPP 964
P P G P G P PP G P GPP
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPP 326
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 31.9 bits (69), Expect = 0.74
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +2
Query: 833 PPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXP 952
PP G + P G PR G P PPP P P
Sbjct: 1573 PPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPPP 1612
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 31.5 bits (68), Expect = 0.98
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -3
Query: 949 PGPXPXGGXXXRTXPXAGXGTRPGXGXXXXXGXPXXPGGXXXP 821
P P P GG P G G P G G P GG P
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPP 811
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 31.5 bits (68), Expect = 0.98
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -3
Query: 949 PGPXPXGGXXXRTXPXAGXGTRPGXGXXXXXGXPXXPGGXXXP 821
P P P GG P G G P G G P GG P
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPP 811
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 31.5 bits (68), Expect = 0.98
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -3
Query: 949 PGPXPXGGXXXRTXPXAGXGTRPGXGXXXXXGXPXXPGGXXXP 821
P P P GG P G G P G G P GG P
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPP 811
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.5 bits (68), Expect = 0.98
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +2
Query: 875 APGSGXXPRXGAXPXXXPPPGAXPXPXGPPXXXXXRXGARXP 1000
APGS P+ G PPPG P GPP GA P
Sbjct: 419 APGSYGPPQGGPGGFGPPPPGG-PGAYGPPPTGFPPVGAPPP 459
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 878 PGSGXXPRXGAXPXXXPPPGAXPXPXGPP 964
PG+ P G P PPPGA P G P
Sbjct: 441 PGAYGPPPTGFPPVGAPPPGAAGAPGGNP 469
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 31.5 bits (68), Expect = 0.98
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -3
Query: 949 PGPXPXGGXXXRTXPXAGXGTRPGXGXXXXXGXPXXPGGXXXP 821
P P P GG P G G P G G P GG P
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPP 811
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.98
Identities = 21/66 (31%), Positives = 24/66 (36%)
Frame = +2
Query: 803 PRXPXXRXXXPPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPPXXXXXR 982
P P PP G PA GS PR G+ P PP G+ P P R
Sbjct: 237 PPPPPPPKGSPPLA-GSGSPPPPPAAGSPPPPRTGSPPP--PPTGSPPPPPAGGSPPPPR 293
Query: 983 XGARXP 1000
G+ P
Sbjct: 294 AGSPPP 299
Score = 31.5 bits (68), Expect = 0.98
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +2
Query: 812 PXXRXXXPPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPP 964
P R PP + PA GS PR G+ P PP G+ P PP
Sbjct: 265 PPPRTGSPPPPPTGS-PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 314
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.98
Identities = 21/66 (31%), Positives = 24/66 (36%)
Frame = +2
Query: 803 PRXPXXRXXXPPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPPXXXXXR 982
P P PP G PA GS PR G+ P PP G+ P P R
Sbjct: 258 PPPPPPPKGSPPLA-GSGSPPPPPAAGSPPPPRTGSPPP--PPTGSPPPPPAGGSPPPPR 314
Query: 983 XGARXP 1000
G+ P
Sbjct: 315 AGSPPP 320
Score = 31.5 bits (68), Expect = 0.98
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +2
Query: 812 PXXRXXXPPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPP 964
P R PP + PA GS PR G+ P PP G+ P PP
Sbjct: 286 PPPRTGSPPPPPTGS-PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 335
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.98
Identities = 21/66 (31%), Positives = 24/66 (36%)
Frame = +2
Query: 803 PRXPXXRXXXPPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPPXXXXXR 982
P P PP G PA GS PR G+ P PP G+ P P R
Sbjct: 243 PPPPPPPKGSPPLA-GSGSPPPPPAAGSPPPPRTGSPPP--PPTGSPPPPPAGGSPPPPR 299
Query: 983 XGARXP 1000
G+ P
Sbjct: 300 AGSPPP 305
Score = 31.5 bits (68), Expect = 0.98
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +2
Query: 812 PXXRXXXPPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPPGAXPXPXGPP 964
P R PP + PA GS PR G+ P PP G+ P PP
Sbjct: 271 PPPRTGSPPPPPTGS-PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 320
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +3
Query: 804 PVXPXXGXXXPPGXXGXPXXXXXPXPGRVPXPAXGXVRXXXPPXGXGPGPXXP 962
P P PG G P P P R P G + PP PG P
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 349
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 872 PAPGSGXXPRXGAXPXXXPPPGAXPXPXGPP 964
P P SG P P PPPG P P G P
Sbjct: 289 PPPSSGMWP-----PPPPPPPGRTPGPPGMP 314
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +3
Query: 804 PVXPXXGXXXPPGXXGXPXXXXXPXPGRVPXPAXGXVRXXXPPXGXGPGPXXP 962
P P PG G P P P R P G + PP PG P
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 359
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 872 PAPGSGXXPRXGAXPXXXPPPGAXPXPXGPP 964
P P SG P P PPPG P P G P
Sbjct: 299 PPPSSGMWP-----PPPPPPPGRTPGPPGMP 324
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical protein
F14F7.1 protein.
Length = 305
Score = 29.5 bits (63), Expect = 3.9
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = -3
Query: 1000 GXPXPXXXXPXXXGXXG-PG-PXPXGGXXXRTXPXAGXGTRPGXGXXXXXGXPXXPGGXX 827
G P P P G G PG P GG R P G R G G P PG
Sbjct: 155 GRPGPPGP-PGRPGSDGQPGRPATGGGAAPRPGPPGPKGPRGAPGNSGRAGAPGQPGNDA 213
Query: 826 XPXXGXTG 803
G G
Sbjct: 214 HGYGGGVG 221
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Frame = +2
Query: 833 PPXXXGXARXXXXPAPGSGXXPRXGAX---PXXXPPPGAXPXPXGPP 964
PP G P P P A P P PG P P GPP
Sbjct: 148 PPGPQGNKGPLGPPGPPGPEGPNGTAGNKGPAGPPGPGGKPGPAGPP 194
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 367 CGSAXXRCXGXXRLGXRGGXASSXRXXXPPXPXACGG 477
CG C G G GG PP P ACGG
Sbjct: 85 CGGGGGGCGGGGG-GCGGGGGCGGGCAPPPPPPACGG 120
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical protein
W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.9
Identities = 20/67 (29%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Frame = +3
Query: 804 PVXPXXGXXXPPGXXGXPXXXXXPXPGRVPXPAXGXVRXXXPPXGXGPG-PXXPXXSGXX 980
P P G P G G P P P P PA P GPG P G
Sbjct: 160 PAGPP-GPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPG 218
Query: 981 XXGXGXP 1001
G P
Sbjct: 219 EPGPAGP 225
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 6.9
Identities = 20/67 (29%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Frame = +3
Query: 804 PVXPXXGXXXPPGXXGXPXXXXXPXPGRVPXPAXGXVRXXXPPXGXGPG-PXXPXXSGXX 980
P P G P G G P P P P PA P GPG P G
Sbjct: 160 PAGPP-GPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPG 218
Query: 981 XXGXGXP 1001
G P
Sbjct: 219 EPGPAGP 225
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 2 (col-2) gene, complete cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 6.9
Identities = 20/67 (29%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Frame = +3
Query: 804 PVXPXXGXXXPPGXXGXPXXXXXPXPGRVPXPAXGXVRXXXPPXGXGPG-PXXPXXSGXX 980
P P G P G G P P P P PA P GPG P G
Sbjct: 160 PAGPP-GPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPG 218
Query: 981 XXGXGXP 1001
G P
Sbjct: 219 EPGPAGP 225
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.9
Identities = 20/67 (29%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Frame = +3
Query: 804 PVXPXXGXXXPPGXXGXPXXXXXPXPGRVPXPAXGXVRXXXPPXGXGPG-PXXPXXSGXX 980
P P G P G G P P P P PA P GPG P G
Sbjct: 160 PAGPP-GPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPG 218
Query: 981 XXGXGXP 1001
G P
Sbjct: 219 EPGPAGP 225
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Frame = +2
Query: 833 PPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPP-GAXPXPXGPP 964
PP G P PG P G P PP A P P PP
Sbjct: 681 PPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPP 725
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Frame = +2
Query: 833 PPXXXGXARXXXXPAPGSGXXPRXGAXPXXXPPP-GAXPXPXGPP 964
PP G P PG P G P PP A P P PP
Sbjct: 681 PPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPP 725
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +1
Query: 409 GXRGGXASSXRXXXPPXPXACGGPXXAXXXAGIRXPPXPGDGAGXXPGAXPP 564
G GG + P CGG A A P P G G P PP
Sbjct: 20 GLGGGGGGCCQPSQPACANPCGGASAAAYAAPAAGYPRPPIGYGAPPPPPPP 71
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +1
Query: 409 GXRGGXASSXRXXXPPXPXACGGPXXAXXXAGIRXPPXPGDGAGXXPGAXPP 564
G GG + P CGG A A P P G G P PP
Sbjct: 20 GLGGGGGGCCQPSQPACANPCGGASAAAYAAPAAGYPRPPIGYGAPPPPPPP 71
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +1
Query: 409 GXRGGXASSXRXXXPPXPXACGGPXXAXXXAGIRXPPXPGDGAGXXPGAXPP 564
G GG + P CGG A A P P G G P PP
Sbjct: 20 GLGGGGGGCCQPSQPACANPCGGASAAAYAAPAAGYPRPPIGYGAPPPPPPP 71
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -3
Query: 946 GPXPXGGXXXRTXPXAGXGTRPGXGXXXXXGXPXXPGGXXXP 821
GP GG P G GT G G G P PGG P
Sbjct: 102 GPGNPGGPGGLGTP-GGPGTPGGPGNPGGLGGPGNPGGPGTP 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.143 0.491
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,418,260
Number of Sequences: 27780
Number of extensions: 196525
Number of successful extensions: 1111
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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