Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A02
         (1006 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89387-1|AAC52056.1|  142|Homo sapiens RNA polymerase II subunit...    33   2.2  
U85510-1|AAC80226.1|  142|Homo sapiens RNA polymerase II subunit...    33   2.2  
BC093797-1|AAH93797.1|  142|Homo sapiens polymerase (RNA) II (DN...    33   2.2  
BC093795-1|AAH93795.1|  142|Homo sapiens polymerase (RNA) II (DN...    33   2.2  
BC017205-1|AAH17205.1|  142|Homo sapiens polymerase (RNA) II (DN...    33   2.2  
AC012306-1|AAY14877.1|   84|Homo sapiens unknown protein.              33   2.2  

>U89387-1|AAC52056.1|  142|Homo sapiens RNA polymerase II subunit
           hsRPB4 protein.
          Length = 142

 Score = 32.7 bits (71), Expect = 2.2
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = +1

Query: 625 VEEDAXDLQXPKXFXNAETXMISEVDMXL 711
           VEEDA  L  PK F  AET + SEV M L
Sbjct: 13  VEEDASQLIFPKEFETAETLLNSEVHMLL 41


>U85510-1|AAC80226.1|  142|Homo sapiens RNA polymerase II subunit
           hsRPB4 protein.
          Length = 142

 Score = 32.7 bits (71), Expect = 2.2
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = +1

Query: 625 VEEDAXDLQXPKXFXNAETXMISEVDMXL 711
           VEEDA  L  PK F  AET + SEV M L
Sbjct: 13  VEEDASQLIFPKEFETAETLLNSEVHMLL 41


>BC093797-1|AAH93797.1|  142|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide D protein.
          Length = 142

 Score = 32.7 bits (71), Expect = 2.2
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = +1

Query: 625 VEEDAXDLQXPKXFXNAETXMISEVDMXL 711
           VEEDA  L  PK F  AET + SEV M L
Sbjct: 13  VEEDASQLIFPKEFETAETLLNSEVHMLL 41


>BC093795-1|AAH93795.1|  142|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide D protein.
          Length = 142

 Score = 32.7 bits (71), Expect = 2.2
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = +1

Query: 625 VEEDAXDLQXPKXFXNAETXMISEVDMXL 711
           VEEDA  L  PK F  AET + SEV M L
Sbjct: 13  VEEDASQLIFPKEFETAETLLNSEVHMLL 41


>BC017205-1|AAH17205.1|  142|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide D protein.
          Length = 142

 Score = 32.7 bits (71), Expect = 2.2
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = +1

Query: 625 VEEDAXDLQXPKXFXNAETXMISEVDMXL 711
           VEEDA  L  PK F  AET + SEV M L
Sbjct: 13  VEEDASQLIFPKEFETAETLLNSEVHMLL 41


>AC012306-1|AAY14877.1|   84|Homo sapiens unknown protein.
          Length = 84

 Score = 32.7 bits (71), Expect = 2.2
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = +1

Query: 625 VEEDAXDLQXPKXFXNAETXMISEVDMXL 711
           VEEDA  L  PK F  AET + SEV M L
Sbjct: 13  VEEDASQLIFPKEFETAETLLNSEVHMLL 41


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,374,363
Number of Sequences: 237096
Number of extensions: 886980
Number of successful extensions: 528
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13433848218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)