Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A02
         (1006 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023309-1|AAY55725.1|  139|Drosophila melanogaster IP02340p pro...    43   8e-04
BT023308-1|AAY55724.1|  139|Drosophila melanogaster IP02337p pro...    43   8e-04
BT022168-1|AAY51562.1|  139|Drosophila melanogaster IP01323p pro...    43   8e-04
AF544020-1|AAN88032.1|  139|Drosophila melanogaster RNA polymera...    43   8e-04
AF544019-1|AAN88031.1|  139|Drosophila melanogaster RNA polymera...    43   8e-04
AE014297-2478|AAF55522.4|  150|Drosophila melanogaster CG33520-P...    30   4.4  

>BT023309-1|AAY55725.1|  139|Drosophila melanogaster IP02340p
           protein.
          Length = 139

 Score = 42.7 bits (96), Expect = 8e-04
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 622 VVEEDAXDLQXPKXFXNAETXMISEVDMXL 711
           +V+EDA DLQ PK F NAET +ISEV M L
Sbjct: 9   MVDEDAADLQFPKEFENAETLLISEVHMLL 38


>BT023308-1|AAY55724.1|  139|Drosophila melanogaster IP02337p
           protein.
          Length = 139

 Score = 42.7 bits (96), Expect = 8e-04
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 622 VVEEDAXDLQXPKXFXNAETXMISEVDMXL 711
           +V+EDA DLQ PK F NAET +ISEV M L
Sbjct: 9   MVDEDAADLQFPKEFENAETLLISEVHMLL 38


>BT022168-1|AAY51562.1|  139|Drosophila melanogaster IP01323p
           protein.
          Length = 139

 Score = 42.7 bits (96), Expect = 8e-04
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 622 VVEEDAXDLQXPKXFXNAETXMISEVDMXL 711
           +V+EDA DLQ PK F NAET +ISEV M L
Sbjct: 9   MVDEDAADLQFPKEFENAETLLISEVHMLL 38


>AF544020-1|AAN88032.1|  139|Drosophila melanogaster RNA polymerase
           II accessory factorrpb4 protein.
          Length = 139

 Score = 42.7 bits (96), Expect = 8e-04
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 622 VVEEDAXDLQXPKXFXNAETXMISEVDMXL 711
           +V+EDA DLQ PK F NAET +ISEV M L
Sbjct: 9   MVDEDAADLQFPKEFENAETLLISEVHMLL 38


>AF544019-1|AAN88031.1|  139|Drosophila melanogaster RNA polymerase
           II accessory factorrpb4 protein.
          Length = 139

 Score = 42.7 bits (96), Expect = 8e-04
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 622 VVEEDAXDLQXPKXFXNAETXMISEVDMXL 711
           +V+EDA DLQ PK F NAET +ISEV M L
Sbjct: 9   MVDEDAADLQFPKEFENAETLLISEVHMLL 38


>AE014297-2478|AAF55522.4|  150|Drosophila melanogaster CG33520-PD,
           isoform D protein.
          Length = 150

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 11/41 (26%)
 Frame = +1

Query: 622 VVEEDAXDLQXPKX-----------FXNAETXMISEVDMXL 711
           +V+EDA DLQ PK            F NAET +ISEV M L
Sbjct: 9   MVDEDAADLQFPKEKKTLSFLFVSEFENAETLLISEVHMLL 49


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,196,476
Number of Sequences: 53049
Number of extensions: 255858
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 5099321547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)