Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P24
         (1023 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     36   0.068
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    33   0.37 
12_02_0072 + 13218669-13218706,13218715-13218781,13220400-132204...    31   1.5  

>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 35.5 bits (78), Expect = 0.068
 Identities = 16/25 (64%), Positives = 16/25 (64%)
 Frame = -2

Query: 317 FFXFXFFFXPFFFXFXPPFXFFFFF 243
           FF F FFF  FFF F   F FFFFF
Sbjct: 62  FFFFFFFFFFFFFFFFFFFFFFFFF 86


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 33.1 bits (72), Expect = 0.37
 Identities = 16/25 (64%), Positives = 16/25 (64%)
 Frame = -2

Query: 317 FFXFXFFFXPFFFXFXPPFXFFFFF 243
           FF F FFF  FFF F   F FFFFF
Sbjct: 87  FFFFFFFFFFFFFFF---FFFFFFF 108


>12_02_0072 +
           13218669-13218706,13218715-13218781,13220400-13220471,
           13222107-13222182,13222309-13222943
          Length = 295

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 24/69 (34%), Positives = 27/69 (39%)
 Frame = +1

Query: 406 KGXGGXGXXGKKKXKXXGEKGXGKXGXKXXTXKKKPXXXXXXXGGRGKXXTKXGKRGXXK 585
           K  GG G  GKK+    G+K  G  G K    KK+         G GK   K G  G  K
Sbjct: 143 KDAGGGGGDGKKEG-GDGKKEEGGDGKKEGEGKKEGDGGGDKKEGEGK---KEGDGGGDK 198

Query: 586 XXGKXXEKK 612
             G    KK
Sbjct: 199 KDGNGDGKK 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.301    0.134    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,832,879
Number of Sequences: 37544
Number of extensions: 81944
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3001039372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.6 bits)