Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P22
         (956 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    30   3.1  
02_02_0045 - 6327123-6327211,6327616-6327787                           28   9.6  

>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 850 YPXXPXLXPSPPXLGXVWPXPPVXTP 927
           YP  P + PSPP +    P PP+ TP
Sbjct: 529 YPSPPEIVPSPPEIA---PSPPIVTP 551



 Score = 28.7 bits (61), Expect = 7.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 850 YPXXPXLXPSPPXLGXVWPXPPVXTPTXGAXIP 948
           YP  P + PSPP    V P PPV  P+     P
Sbjct: 411 YPPPPDISPSPPP--SVTPLPPVVYPSPPEVTP 441



 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 844 VRYPXXPXLXPSPPXLGXVWPXPPVXTPTXGAXIP 948
           V YP  P + PSPP +   +P PP   P+     P
Sbjct: 431 VVYPSPPEVTPSPPEIAP-YPSPPEIVPSPPEITP 464



 Score = 28.7 bits (61), Expect = 7.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 850 YPXXPXLXPSPPXLGXVWPXPPVXTP 927
           YP  P + PSPP +   +P PP  TP
Sbjct: 557 YPSPPEVTPSPPEI-TPYPSPPEVTP 581


>02_02_0045 - 6327123-6327211,6327616-6327787
          Length = 86

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 770 LTGIPVPPFLPFGEAWPPSP 829
           + G+P PP LP G+  P SP
Sbjct: 37  IAGVPSPPILPDGDRTPESP 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,027,321
Number of Sequences: 37544
Number of extensions: 337051
Number of successful extensions: 788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)