Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_P20
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 118 6e-27
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 117 1e-26
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 30 2.8
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 6.5
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 6.5
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 8.5
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 8.5
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 118 bits (284), Expect = 6e-27
Identities = 56/100 (56%), Positives = 68/100 (68%)
Frame = +1
Query: 91 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 270
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 271 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 390
T++Y+ K RAGRGFTL E++AAG+ FA TIGI+VD R
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHR 100
Score = 82.2 bits (194), Expect = 5e-16
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Frame = +2
Query: 398 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 574
N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ EE ATQ++G MP+ + +
Sbjct: 103 NRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKR 162
Query: 575 SV-ARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 691
SV +T+D K FKAY LR R + +G R KR +A
Sbjct: 163 SVEVVKVTDDMKAFKAYAKLRVERMNQRHIGARQKRAAEA 202
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 117 bits (281), Expect = 1e-26
Identities = 55/100 (55%), Positives = 68/100 (68%)
Frame = +1
Query: 91 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 270
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 271 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 390
T++Y+ K RAGRGFTL E++AAG+ +A TIGI+VD R
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHR 100
Score = 81.0 bits (191), Expect = 1e-15
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Frame = +2
Query: 398 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 574
N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ EE ATQ++G MP+ + +
Sbjct: 103 NRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKR 162
Query: 575 SV-ARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 691
SV +T++ K FKAY LR R + VG R KR +A
Sbjct: 163 SVEVVKVTDEMKAFKAYAKLRVERMNQRHVGARQKRAAEA 202
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 429 TLICNDSTDLLRLXGIYSN-SNRSGKYWVQSCG 334
TLI N +T+L RL GIY N N SG ++ G
Sbjct: 167 TLIANKNTELQRLVGIYKNILNNSGVTLIEGRG 199
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 385 DLQQFQSFGQILGSILRP 332
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 385 DLQQFQSFGQILGSILRP 332
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +2
Query: 167 TSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 337
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 407 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQL 535
++SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,606,604
Number of Sequences: 37544
Number of extensions: 376925
Number of successful extensions: 923
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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