Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P18
         (1098 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    77   6e-15
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    74   4e-14
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    64   3e-11
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    54   4e-08
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    44   3e-05

>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 76.6 bits (180), Expect = 6e-15
 Identities = 40/81 (49%), Positives = 49/81 (60%)
 Frame = +2

Query: 335 AXXNXLGMNPNNTIFDAKXLIGRKFEDATVQADMKHWXFRGCQ*WRXS*GSXXHIRVXHT 514
           A  N + MNP+NTIFDAK LIGRKF+D  VQ+DMKHW F+               +    
Sbjct: 52  AAKNQVAMNPHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVIS-KDGKPVLQVEYKGETK 110

Query: 515 TFIPEEVRSMVLTKMKETGRS 577
           TF PEE+ SMVL KM+ET  +
Sbjct: 111 TFTPEEISSMVLMKMRETAEA 131



 Score = 30.3 bits (65), Expect = 0.50
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 207 GSTYXXVGVFQHGKGEIIANDQSQQ 281
           G+TY  VG F + + EIIANDQ  +
Sbjct: 10  GTTYSCVGHFSNNRVEIIANDQGNR 34



 Score = 29.9 bits (64), Expect = 0.66
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 277 NRTXPTYVAYRDTEXXIG 330
           NRT P+YVA+ DTE  IG
Sbjct: 33  NRTTPSYVAFTDTERLIG 50


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 73.7 bits (173), Expect = 4e-14
 Identities = 38/81 (46%), Positives = 49/81 (60%)
 Frame = +2

Query: 335 AXXNXLGMNPNNTIFDAKXLIGRKFEDATVQADMKHWXFRGCQ*WRXS*GSXXHIRVXHT 514
           A  N + MNP+NTIFDAK LIGR+F D  VQ+DMKHW F+  +            +    
Sbjct: 52  AAKNQVAMNPHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIE-KDGKPLIQVEFKGETK 110

Query: 515 TFIPEEVRSMVLTKMKETGRS 577
           TF PEE+ SMVL KM+E+  +
Sbjct: 111 TFTPEEISSMVLLKMRESAEA 131



 Score = 30.3 bits (65), Expect = 0.50
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 207 GSTYXXVGVFQHGKGEIIANDQSQQ 281
           G+TY  VG F + + EIIANDQ  +
Sbjct: 10  GTTYSCVGHFSNNRVEIIANDQGNR 34



 Score = 29.9 bits (64), Expect = 0.66
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 277 NRTXPTYVAYRDTEXXIG 330
           NRT P+YVA+ DTE  IG
Sbjct: 33  NRTTPSYVAFTDTERLIG 50


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 36/87 (41%), Positives = 48/87 (55%)
 Frame = +2

Query: 305 TETPXVSSEHAXXNXLGMNPNNTIFDAKXLIGRKFEDATVQADMKHWXFRGCQ*WRXS*G 484
           TET  +  + A  N   MNP NT+FDAK LIGR++ED   Q D+KHW F+          
Sbjct: 47  TETERLVGD-AAKNQAAMNPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTI 105

Query: 485 SXXHIRVXHTTFIPEEVRSMVLTKMKE 565
              ++      F  +E+ +MVLTKMKE
Sbjct: 106 EVNYLG-EKKQFTAQEISAMVLTKMKE 131


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 30/81 (37%), Positives = 44/81 (54%)
 Frame = +2

Query: 335 AXXNXLGMNPNNTIFDAKXLIGRKFEDATVQADMKHWXFRGCQ*WRXS*GSXXHIRVXHT 514
           A  N    NP NTIFD K LIGRKF++ T+  D+K + F      +       ++     
Sbjct: 85  AAKNQAPSNPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVN-DKNRPLVEVNVGGKKK 143

Query: 515 TFIPEEVRSMVLTKMKETGRS 577
            F PEE+ +M+L+KMK+T  +
Sbjct: 144 KFTPEEISAMILSKMKQTAEA 164



 Score = 31.1 bits (67), Expect = 0.28
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 207 GSTYXXVGVFQHGKGEIIANDQSQQ 281
           G+TY  V V ++G+ EIIANDQ  +
Sbjct: 43  GTTYSCVAVMKNGRVEIIANDQGNR 67


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 24/71 (33%), Positives = 39/71 (54%)
 Frame = +2

Query: 356 MNPNNTIFDAKXLIGRKFEDATVQADMKHWXFRGCQ*WRXS*GSXXHIRVXHTTFIPEEV 535
           +NP NT F  K LIGR+F++  VQ D+K   ++  +    S G    +     T+ P ++
Sbjct: 108 INPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVE---HSNGDAW-LEARGKTYSPSQI 163

Query: 536 RSMVLTKMKET 568
              +L+KM+ET
Sbjct: 164 GGFILSKMRET 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,160
Number of Sequences: 5004
Number of extensions: 31130
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 579724962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)