Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P17
         (1165 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.31 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.53 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 22/80 (27%), Positives = 26/80 (32%)
 Frame = +1

Query: 910  TPXHPXXPPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXXPRAP 1089
            TP     PP    P   +PPP P    AP        S A P      P        ++P
Sbjct: 132  TPQSELRPPTSAPPRPSIPPPSPAS--AP-----PIPSKAPPIPSSLPPPAQPAAPVKSP 184

Query: 1090 XXXXXIRXPXXPHPPXTPPP 1149
                 +     P PP  PPP
Sbjct: 185  PSAPSLPSAVPPMPPKVPPP 204


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 913 PXHPXXPPQPP--XPPXXLPPPGPXG 984
           P +P  PP PP   PP   PPP P G
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 30.3 bits (65), Expect = 0.53
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 922 PXXPPQPPXPPXXLPPPGPXGXXAPG 999
           P  PP PP PP   PP  P     PG
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 913  PXHPXXPPQPPXPPXXLPPPGP 978
            P  P  PP P  PP   PPP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 910 TPXHPXXPPQPPXPPXXLPPPGP 978
           TP  P  P  PP  P  LPP  P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAP 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,864
Number of Sequences: 5004
Number of extensions: 18869
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 623552966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)