Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_P17
(1165 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 34 0.22
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 33 0.39
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 33 0.51
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 32 0.67
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 32 0.67
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 32 0.67
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 32 0.89
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 32 0.89
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 31 1.6
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 31 1.6
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 1.6
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 31 1.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.6
Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical pr... 31 2.1
Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical pr... 31 2.1
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 31 2.1
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 31 2.1
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 31 2.1
Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.7
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 2.7
U27312-10|AAA68253.1| 231|Caenorhabditis elegans Hypothetical p... 30 2.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.7
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 30 2.7
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 30 2.7
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 30 3.6
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 30 3.6
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 30 3.6
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 3.6
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 3.6
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 30 3.6
AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen prot... 30 3.6
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 26 4.1
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 26 4.2
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 4.8
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 4.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 6.3
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 6.3
AF003130-14|AAB54129.1| 892|Caenorhabditis elegans Hypothetical... 29 6.3
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 29 8.3
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 8.3
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 29 8.3
U55366-3|AAY86188.1| 118|Caenorhabditis elegans Hypothetical pr... 29 8.3
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 8.3
U29380-1|AAA68740.1| 346|Caenorhabditis elegans Hypothetical pr... 29 8.3
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 29 8.3
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 29 8.3
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 8.3
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 29 8.3
AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical ... 29 8.3
AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical ... 29 8.3
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 8.3
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 33.9 bits (74), Expect = 0.22
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +1
Query: 910 TPXHPXXPPQPPXPPXXLP--PPGPXGXXAPG 999
+P P PP PP PP P PPGP PG
Sbjct: 239 SPSDPPGPPGPPGPPTRRPPGPPGPPTRRPPG 270
Score = 31.1 bits (67), Expect = 1.6
Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Frame = +1
Query: 913 PXHPXXPPQPPXPPXXLP-----PPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXX 1077
P P P P PP P P P +PG + GP T
Sbjct: 197 PVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRR 256
Query: 1078 PRAPXXXXXIRXPXXPHPPXTPPP 1149
P P R P P PP PP
Sbjct: 257 PPGPPGPPTRRPPGPPGPPTRRPP 280
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 33.1 bits (72), Expect = 0.39
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXG 984
C P P PP PP PP PGP G
Sbjct: 100 CQCEPIRPKCPPGPPGPPGCRGEPGPSG 127
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical protein
ZC373.7 protein.
Length = 297
Score = 32.7 bits (71), Expect = 0.51
Identities = 23/82 (28%), Positives = 25/82 (30%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXXP 1080
C P P PP PP PP PG G APG + + P P P
Sbjct: 94 CQCEPTKPTCPPGPPGPPGPAGQPGTPG--APGPKGQDSTTTFAPINCPTAPSDCIKCAP 151
Query: 1081 RAPXXXXXIRXPXXPHPPXTPP 1146
P P P P P
Sbjct: 152 -GPAGPAGSAGPAGPKGPDGRP 172
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.67
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPPGPXG 984
P PP PP PP PPGP G
Sbjct: 223 PPGPPGPPGPPGPQGPPGPPG 243
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Frame = +1
Query: 913 PXHPXXPPQ---PPXPPXXLPPPGPXGXXAP 996
P P PP PP PP PPGP G P
Sbjct: 145 PGPPPKPPCQKCPPGPPGPAGPPGPKGLPGP 175
Score = 29.5 bits (63), Expect = 4.8
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Frame = +1
Query: 931 PPQPPXPPXXLPPPGPXGXXA-PGXXXRXXKSXAXPXXLX*GPDQNTTXXPRAPXXXXXI 1107
PP PP PP PPGP G PG + K A P L P + + P
Sbjct: 223 PPGPPGPPG---PPGPQGPPGPPGKDGQPGK--AGPPGLPGDPGEKGSDGLPGPHGGTGP 277
Query: 1108 RXPXXPHPPXT----PPPTXXXG 1164
R P P P + PPP G
Sbjct: 278 RGP--PGQPGSCDHCPPPRTGPG 298
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein 10
protein.
Length = 294
Score = 32.3 bits (70), Expect = 0.67
Identities = 25/83 (30%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GP-DQNTTXX 1077
C P P PP PP PP PG G APG + P L P Q+
Sbjct: 92 CQCEPTKPTCPPGPPGPPGQPGAPGTPG--APGPKGDDNTATFAP--LTCAPVSQDCVKC 147
Query: 1078 PRAPXXXXXIRXPXXPHPPXTPP 1146
P P P P P P
Sbjct: 148 PEGPAGPAGPEGPAGPAGPDGQP 170
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein 144
protein.
Length = 306
Score = 32.3 bits (70), Expect = 0.67
Identities = 25/83 (30%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GP-DQNTTXX 1077
C P P PP PP PP PG G APG + P L P Q+
Sbjct: 104 CQCEPTKPTCPPGPPGPPGQPGAPGTPG--APGPKGDDNTATFAP--LTCAPVSQDCVKC 159
Query: 1078 PRAPXXXXXIRXPXXPHPPXTPP 1146
P P P P P P
Sbjct: 160 PEGPAGPAGPEGPAGPAGPDGQP 182
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein 145
protein.
Length = 294
Score = 31.9 bits (69), Expect = 0.89
Identities = 23/82 (28%), Positives = 26/82 (31%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXXP 1080
C P P PP PP PP PG G APG + P Q+ P
Sbjct: 92 CQCEPTKPTCPPGPPGPPGQPGAPGTPG--APGPKGDDNTATFAPLTCA-QVSQDCVKCP 148
Query: 1081 RAPXXXXXIRXPXXPHPPXTPP 1146
+ P P P P P
Sbjct: 149 QGPAGPAGPSGPAGPAGPDGQP 170
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 31.9 bits (69), Expect = 0.89
Identities = 22/78 (28%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Frame = +1
Query: 934 PQPPXPPXXLPPPGPXG-XXAPGXXXRXXKSXAXPXXLX*GPDQNTTXXPRAPXXXXXIR 1110
P PP PP PPG G APG + GP P P
Sbjct: 210 PPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGPPGQDGSG 269
Query: 1111 XPXXPHPPXTPPPTXXXG 1164
P PP P P G
Sbjct: 270 GAAQPGPPGPPGPPGNDG 287
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical protein
ZK1010.5 protein.
Length = 756
Score = 31.5 bits (68), Expect = 1.2
Identities = 23/75 (30%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Frame = +1
Query: 934 PQPPXPPXXLPPPGPXGXXAP-GXXXRXXKSXAXPXXLX*GP-DQNTTXXPRAPXXXXXI 1107
PQPP PP P P P P +S A P P D T P P
Sbjct: 584 PQPPSPPSPEPEPEPKSTPEPVTDGPNESQSTALPQQTTDAPVDPVTEASPLNPQPPPPP 643
Query: 1108 RXPXXPHPPXTPPPT 1152
P P PP T
Sbjct: 644 SPSPEPEPEPKPPVT 658
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Frame = +1
Query: 913 PXHPXXPPQPP-----XPPXXLPPPGPXGXXAPG 999
P HP PPQ P PP PPGP G APG
Sbjct: 127 PGHPGKPPQSPCEPLTPPPCPACPPGPPG--APG 158
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 31.1 bits (67), Expect = 1.6
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXGXXAP 996
C P P PP PP PP PG G P
Sbjct: 92 CQCEPAKPVCPPGPPGPPGEPGQPGSAGPPGP 123
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein 34
protein.
Length = 299
Score = 31.1 bits (67), Expect = 1.6
Identities = 28/96 (29%), Positives = 29/96 (30%), Gaps = 4/96 (4%)
Frame = +1
Query: 889 TQXRCXHTPXHPXXPPQPPXPPXXLPPPG----PXGXXAPGXXXRXXKSXAXPXXLX*GP 1056
T C P P PP PP PP PG P APG K P P
Sbjct: 141 TPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEP--GPKGPPGPPGAPGAP 198
Query: 1057 DQNTTXXPRAPXXXXXIRXPXXPHPPXTPPPTXXXG 1164
T P P + P P PP P G
Sbjct: 199 --GTPGEPGVPAQSEPL-IPGEPGPPGEAGPQGPPG 231
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.1 bits (67), Expect = 1.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXGXXAP 996
C P P PP PP PP PPP P +P
Sbjct: 56 CPPPPMCPPPPPPPP-PPMCPPPPPPMPSYSP 86
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular collagen
RAM-4 protein.
Length = 299
Score = 31.1 bits (67), Expect = 1.6
Identities = 28/96 (29%), Positives = 29/96 (30%), Gaps = 4/96 (4%)
Frame = +1
Query: 889 TQXRCXHTPXHPXXPPQPPXPPXXLPPPG----PXGXXAPGXXXRXXKSXAXPXXLX*GP 1056
T C P P PP PP PP PG P APG K P P
Sbjct: 141 TPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEP--GPKGPPGPPGAPGAP 198
Query: 1057 DQNTTXXPRAPXXXXXIRXPXXPHPPXTPPPTXXXG 1164
T P P + P P PP P G
Sbjct: 199 --GTPGEPGVPAQSEPL-IPGEPGPPGEAGPQGPPG 231
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 1.6
Identities = 21/76 (27%), Positives = 23/76 (30%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXXPRAPXXXX 1101
P P PP PP PP G P + + P P T P P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPP-----PPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 287
Query: 1102 XIRXPXXPHPPXTPPP 1149
P PP PPP
Sbjct: 288 SPPPPRAGSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 1.6
Identities = 21/76 (27%), Positives = 23/76 (30%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXXPRAPXXXX 1101
P P PP PP PP G P + + P P T P P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPP-----PPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 308
Query: 1102 XIRXPXXPHPPXTPPP 1149
P PP PPP
Sbjct: 309 SPPPPRAGSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 1.6
Identities = 21/76 (27%), Positives = 23/76 (30%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXXPRAPXXXX 1101
P P PP PP PP G P + + P P T P P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPP-----PPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 293
Query: 1102 XIRXPXXPHPPXTPPP 1149
P PP PPP
Sbjct: 294 SPPPPRAGSPPPPPPP 309
>Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical
protein F54D1.3 protein.
Length = 310
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXGXXAP 996
C P P PP PP PP PG G P
Sbjct: 108 CQCEPTKPTCPPGPPGPPGQPGAPGVPGAPGP 139
>Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical
protein F54D1.2 protein.
Length = 294
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXGXXAP 996
C P P PP PP PP PG G P
Sbjct: 92 CQCEPTKPTCPPGPPGPPGQPGAPGVPGAPGP 123
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXGXXAP 996
C P P PP P L PPGP G P
Sbjct: 138 CPEGPPGPAGPPGPQGNKGPLGPPGPPGPEGP 169
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical protein
C09G5.5 protein.
Length = 317
Score = 30.7 bits (66), Expect = 2.1
Identities = 25/80 (31%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Frame = +1
Query: 931 PPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GPD--QNTTXXPRAPXXXXX 1104
PP PP P PG G APG R +S L GP P AP
Sbjct: 168 PPGPPGPAGDAGSPGQAG--APGNPGRPGQSGQRSRGLP-GPSGRPGPQGPPGAPGQPGS 224
Query: 1105 IRXPXXPHPPXTPPPTXXXG 1164
P PP P P G
Sbjct: 225 GSTPGPAGPPGPPGPNGQPG 244
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXGXXAP 996
C P P PP P L PPGP G P
Sbjct: 140 CPEGPPGPAGPPGPDGNKGPLGPPGPPGPEGP 171
>Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical
protein C01H6.1 protein.
Length = 307
Score = 30.3 bits (65), Expect = 2.7
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPG-PXGXXAPG 999
C P P PP PP PP PG P PG
Sbjct: 94 CQCEPTKPVCPPGPPGPPGNSGSPGNPGSRGVPG 127
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.7
Identities = 23/80 (28%), Positives = 24/80 (30%)
Frame = +1
Query: 910 TPXHPXXPPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXXPRAP 1089
TP PP PP PPP P PG P P P P
Sbjct: 280 TPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339
Query: 1090 XXXXXIRXPXXPHPPXTPPP 1149
+R P PP PPP
Sbjct: 340 ----GMRYPGGMPPP--PPP 353
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 30.3 bits (65), Expect = 2.7
Identities = 22/81 (27%), Positives = 24/81 (29%), Gaps = 4/81 (4%)
Frame = +1
Query: 919 HPXXPPQPPXP----PXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXXPRA 1086
H PP PP P PP P P P P + P +
Sbjct: 118 HEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPS 177
Query: 1087 PXXXXXIRXPXXPHPPXTPPP 1149
P R P P PP PPP
Sbjct: 178 PEPRNPPRTPPSPIPP--PPP 196
>U27312-10|AAA68253.1| 231|Caenorhabditis elegans Hypothetical
protein F26A1.12 protein.
Length = 231
Score = 30.3 bits (65), Expect = 2.7
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 907 HTPXHPXXPPQPPXPPXXLPPPGPXGXXAPG 999
H P P P +PP PP PPP PG
Sbjct: 46 HGP-RPPRPNRPPRPPPATPPPTTPAPSCPG 75
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.7
Identities = 23/80 (28%), Positives = 24/80 (30%)
Frame = +1
Query: 910 TPXHPXXPPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXXPRAP 1089
TP PP PP PPP P PG P P P P
Sbjct: 290 TPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349
Query: 1090 XXXXXIRXPXXPHPPXTPPP 1149
+R P PP PPP
Sbjct: 350 ----GMRYPGGMPPP--PPP 363
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXGXXAPG 999
C P P PP P PP PPGP G APG
Sbjct: 159 CFDCPPGPAGPPGGPGPPG---PPGPEG--APG 186
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 30.3 bits (65), Expect = 2.7
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +1
Query: 922 PXXPPQ--PPXPPXXLPPPGPXG 984
P P Q PP PP PPPGP G
Sbjct: 260 PGLPGQCGPPGPPGYTPPPGPPG 282
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPPGPXG-XXAPG 999
P PP PP P PPGP G APG
Sbjct: 228 PPGPPGPPGAPGNDGPPGPPGPKGAPG 254
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPPGPXG-XXAPG 999
P PP PP P PPGP G APG
Sbjct: 223 PPGPPGPPGAPGNDGPPGPPGPKGAPG 249
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 29.9 bits (64), Expect = 3.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 913 PXHPXXPPQPPXPPXXLPPPGP 978
P + PP PP PP PPP P
Sbjct: 128 PQYIEAPPPPPSPPPPPPPPPP 149
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 29.9 bits (64), Expect = 3.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 931 PPQPPXPPXXLPPPGPXGXXAP 996
PP PP PP PPP P P
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPP 23
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 29.9 bits (64), Expect = 3.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 931 PPQPPXPPXXLPPPGPXGXXAP 996
PP PP PP PPP P P
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPP 23
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPPGPXG-XXAPG 999
P PP PP P PPGP G APG
Sbjct: 223 PPGPPGPPGAPGNDGPPGPPGPKGAPG 249
>AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen protein
49 protein.
Length = 283
Score = 29.9 bits (64), Expect = 3.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPPGPXGXXAP 996
P PP PP PP L P G G P
Sbjct: 142 PAGPPGPPGPPGPLGPRGDKGPSGP 166
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 25.8 bits (54), Expect(2) = 4.1
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 931 PPQPPXPPXXLPPPGPXGXXAP 996
PP PP PP LP G P
Sbjct: 631 PPPPPPPPMGLPAVGAGAPPPP 652
Score = 22.2 bits (45), Expect(2) = 4.1
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 919 HPXXPPQPPXPP 954
H PP PP PP
Sbjct: 606 HAVPPPPPPPPP 617
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 25.8 bits (54), Expect(2) = 4.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 931 PPQPPXPPXXLPPPGPXGXXAP 996
PP PP PP LP G P
Sbjct: 457 PPPPPPPPMGLPAVGAGAPPPP 478
Score = 22.2 bits (45), Expect(2) = 4.2
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 919 HPXXPPQPPXPP 954
H PP PP PP
Sbjct: 432 HAVPPPPPPPPP 443
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 29.5 bits (63), Expect = 4.8
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +1
Query: 901 CXHTPXHPXXPPQPPXPPXXLPPPGPXGXXAP 996
C + P P PP PP P P P P P
Sbjct: 81 CPYVPPAPLPPPPPPASPCCGPSPVPAPCCPP 112
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.5 bits (63), Expect = 4.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 913 PXHPXXPPQPPXPPXXLPPPGP 978
P P PP P PP PPP P
Sbjct: 132 PPPPPPPPHYPPPPPHYPPPPP 153
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 4.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 931 PPQPPXPPXXLPPPGP 978
PP PP PP PPP P
Sbjct: 758 PPPPPPPPGGCPPPPP 773
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Frame = +1
Query: 931 PPQPPXPPXXL----PPPGPXGXXAP 996
PP PP PP PPP P G AP
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 4.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 931 PPQPPXPPXXLPPPGP 978
PP PP PP PPP P
Sbjct: 758 PPPPPPPPGGCPPPPP 773
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Frame = +1
Query: 931 PPQPPXPPXXL----PPPGPXGXXAP 996
PP PP PP PPP P G AP
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 4.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 931 PPQPPXPPXXLPPPGP 978
PP PP PP PPP P
Sbjct: 341 PPPPPPPPGGCPPPPP 356
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Frame = +1
Query: 931 PPQPPXPPXXL----PPPGPXGXXAP 996
PP PP PP PPP P G AP
Sbjct: 353 PPPPPPPPGGFKGGPPPPPPPGMFAP 378
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical protein
H06A10.2 protein.
Length = 305
Score = 29.1 bits (62), Expect = 6.3
Identities = 23/85 (27%), Positives = 23/85 (27%), Gaps = 4/85 (4%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNT----TXXPRAP 1089
P PP PP P P GP G P GP N T P P
Sbjct: 156 PAGPPGPPGPDGPAGPAGPDGEAGSPAAPSPPGPPGPPGPA--GPAGNDGAAGTPGPDGP 213
Query: 1090 XXXXXIRXPXXPHPPXTPPPTXXXG 1164
P P P P P G
Sbjct: 214 AGESTYPEPAGPGPAGPPGPAGPPG 238
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.1 bits (62), Expect = 6.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 913 PXHPXXPPQPPXPPXXLPPPGP 978
P P PP PP PP PPP P
Sbjct: 66 PPPPICPP-PPPPPMPCPPPPP 86
>AF003130-14|AAB54129.1| 892|Caenorhabditis elegans Hypothetical
protein F55A12.1 protein.
Length = 892
Score = 29.1 bits (62), Expect = 6.3
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 292 HPPAPRXXXPXDSXPRPPXRAXXXSXPPTPPXXXQA 399
HPP P P P PP A + PP PP A
Sbjct: 4 HPPQPHPPMP----PMPPVTAPPGTMPPMPPVPADA 35
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical protein
Y41E3.2 protein.
Length = 289
Score = 28.7 bits (61), Expect = 8.3
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +1
Query: 913 PXHPXXPPQPPXPPXXLPPPGPXG-XXAPGXXXRXXKS 1023
P P P P P + PPGP G APG KS
Sbjct: 163 PKGPDAAPGEPGPKGPIGPPGPPGQAGAPGEPGSPAKS 200
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPP 972
P PP PP PP PPP
Sbjct: 354 PPAPPPPPPPPPPPPPP 370
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 931 PPQPPXPPXXLPPPGP 978
PP PP PP PPP P
Sbjct: 354 PPAPPPPPPPPPPPPP 369
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical protein
F33A8.9 protein.
Length = 346
Score = 28.7 bits (61), Expect = 8.3
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +1
Query: 913 PXHPXXPPQPPXPPXXLPPPGPXGXXAPGXXXRXXKSXAXP 1035
P P PP PP P + P GP G PG + + P
Sbjct: 236 PPGPPGPPGPPGNPGGIGPRGPPGD--PGIMTQDSRGVEGP 274
>U55366-3|AAY86188.1| 118|Caenorhabditis elegans Hypothetical
protein F41F3.8 protein.
Length = 118
Score = 28.7 bits (61), Expect = 8.3
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 913 PXHPXXPPQPPXPPXXLPPPGPXGXXAP 996
P P PP PP PP PP AP
Sbjct: 47 PFAPPPPPSPPLPPKCECPPPTCNSCAP 74
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPPGPXG-XXAPG 999
P PP PP P PPGP G +PG
Sbjct: 230 PAGPPGPPGAPGNDGPPGPPGPKGSPG 256
>U29380-1|AAA68740.1| 346|Caenorhabditis elegans Hypothetical
protein ZK546.7 protein.
Length = 346
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPP 972
P PP PP PP PPP
Sbjct: 147 PKLPPPPPIPPPGPPPP 163
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 28.7 bits (61), Expect = 8.3
Identities = 24/89 (26%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Frame = +1
Query: 913 PXHPXXPPQPPXPPXXLP-----PPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXX 1077
P H PP PP +P PP P G P P GP +
Sbjct: 77 PHHMGMPPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPP-FSVP 135
Query: 1078 PRAPXXXXXIRXPXXPHPP----XTPPPT 1152
P P P P PP PPP+
Sbjct: 136 PSVPPPTSSAAAPIVPPPPVQSTAQPPPS 164
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 28.7 bits (61), Expect = 8.3
Identities = 24/89 (26%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Frame = +1
Query: 913 PXHPXXPPQPPXPPXXLP-----PPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXX 1077
P H PP PP +P PP P G P P GP +
Sbjct: 100 PHHMGMPPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPP-FSVP 158
Query: 1078 PRAPXXXXXIRXPXXPHPP----XTPPPT 1152
P P P P PP PPP+
Sbjct: 159 PSVPPPTSSAAAPIVPPPPVQSTAQPPPS 187
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.7 bits (61), Expect = 8.3
Identities = 24/89 (26%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Frame = +1
Query: 913 PXHPXXPPQPPXPPXXLP-----PPGPXGXXAPGXXXRXXKSXAXPXXLX*GPDQNTTXX 1077
P H PP PP +P PP P G P P GP +
Sbjct: 350 PHHMGMPPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPP-FSVP 408
Query: 1078 PRAPXXXXXIRXPXXPHPP----XTPPPT 1152
P P P P PP PPP+
Sbjct: 409 PSVPPPTSSAAAPIVPPPPVQSTAQPPPS 437
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = +1
Query: 931 PPQPPXPPXX--LPPPGPXGXXAPG 999
PP PP P LPPP P G PG
Sbjct: 49 PPPPPFGPVGYALPPPPPNGYALPG 73
>AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.2 protein.
Length = 381
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPP 972
P PP PP PP PPP
Sbjct: 182 PKPPPPPPIPPPGPPPP 198
>AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.3 protein.
Length = 381
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPP 972
P PP PP PP PPP
Sbjct: 182 PKPPPPPPIPPPGPPPP 198
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 922 PXXPPQPPXPPXXLPPPGPXG-XXAPG 999
P PP PP P PPGP G +PG
Sbjct: 230 PAGPPGPPGAPGNDGPPGPPGPKGSPG 256
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,154,941
Number of Sequences: 27780
Number of extensions: 189339
Number of successful extensions: 2818
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2261
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3172075232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -