Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P16
         (1130 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical ...    30   3.5  
U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical p...    29   4.6  

>AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical
            protein F49H12.5 protein.
          Length = 257

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +2

Query: 884  KEERXKXRXKKXXKXXXGXXKKXKKRXKXKEXXXXXXGXXXRKKXXKEKKXKRGXKXXXE 1063
            KEE+ +   K+  K      KK KK+ + KE          + +  K+KK K   K   +
Sbjct: 172  KEEKKEEAKKEEKKVEKKEEKKDKKKDEKKEEKKEKKEDKKKDEKKKDKK-KEDKKDKKD 230

Query: 1064 XKEXXRXRXGKXKXXXKK 1117
             K+    +  K K   KK
Sbjct: 231  KKDKKDKKDKKEKKDDKK 248


>U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical
            protein C33G8.2 protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 30/169 (17%), Positives = 58/169 (34%)
 Frame = +1

Query: 535  KEXKXEKKXXXKXEKXXKXXKGGXXREGXXXKXXXXXXGXKKEKKXKKXXGXGRRKKKXX 714
            +E K +KK   K E+  +  +    ++             KK+KK KK       K+K  
Sbjct: 140  EEEKDKKKKDKKKEEDDEEEEQKDKKKKDEKNDDDDEEDKKKDKKKKKDDNDEEEKEKDK 199

Query: 715  XKRRXRKRXXXXXXXEXKKKXXXGXEXXEGXXXXKXXKRXKXGXXXXXGXEXRXXXKRRE 894
             K+  +K          KKK     +  +     +  K+           +     + ++
Sbjct: 200  KKKDKKKDDDDDEDENDKKKDKKKKKDDKDDDENEDDKKKDKKKKKDDKEKDDDDEEEKD 259

Query: 895  RXKXXXKXXXXXXXEXXEXKKEXKXKGXGXXXEXXXXXEKXXERKEXEK 1041
            + K   K       +  + KK+ K K      E     +K  ++K+ +K
Sbjct: 260  KKK---KDKKKNDDDEEDKKKDKKKKKDDDDDEDEDNKKKDKKKKKDDK 305



 Score = 28.7 bits (61), Expect = 8.0
 Identities = 33/130 (25%), Positives = 42/130 (32%), Gaps = 1/130 (0%)
 Frame = +2

Query: 653  EKKKKKXKRXXGXGEGKKKXXXKEXXGKE-XXXXXXXKXKRKXXXXKXXXKXXXKXXGXK 829
            +KKKK  K      + KKK   K+   KE        K K+K    K       K    K
Sbjct: 221  KKKKKDDKDDDENEDDKKKDKKKKKDDKEKDDDDEEEKDKKKKDKKKNDDDEEDKKKDKK 280

Query: 830  XXKXXXXXXXEXKXGKXXKEERXKXRXKKXXKXXXGXXKKXKKRXKXKEXXXXXXGXXXR 1009
              K       E    K  K+       KK  K      K+  K+ K K+           
Sbjct: 281  KKKDDDDDEDEDNKKKDKKK-------KKDDKDDEDEEKEKDKKKKDKKKDDDDDDDEKE 333

Query: 1010 KKXXKEKKXK 1039
            KK  K+K  K
Sbjct: 334  KKDKKKKDDK 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.303    0.130    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,033,681
Number of Sequences: 27780
Number of extensions: 35278
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3057296194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)