Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P13
         (968 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996...    32   0.79 
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090...    29   5.6  

>10_06_0039 -
           9966744-9967535,9968241-9968482,9969021-9969223,
           9969333-9970645
          Length = 849

 Score = 31.9 bits (69), Expect = 0.79
 Identities = 18/46 (39%), Positives = 18/46 (39%)
 Frame = -2

Query: 478 ADPAPXSRXPEPXESVSRGSXXAPNTLSASPXGLADSLMPXXPPTP 341
           A PAP SR   P    S GS    N   ASP        P  PP P
Sbjct: 293 APPAPRSRRTPPRTRFSAGSGAEMNKQMASPPSNPPPAPPPPPPPP 338


>09_06_0107 +
           20907560-20908491,20908511-20908625,20908967-20909058,
           20909293-20909556,20910714-20911494
          Length = 727

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = -2

Query: 493 PPLXXADPAPXSRXPEPXESVSRGSXXAPNTLSASPXGLADSLMPXXPPTPXP*AW 326
           PP     P P    P P       +    N+ S S    A  ++P  PP P P +W
Sbjct: 79  PPSPPPPPPPPPPPPPPLSPTPTTTSWTTNSSSIS----ASPILPPPPPPPMPSSW 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,218
Number of Sequences: 37544
Number of extensions: 170660
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)