Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P12
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      31   0.18 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   3.8  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   5.0  

>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 485 FNMKEELEEGHFDTQGHYHWKK-EKEIR-DGWLD 580
           FN+KE++EEG FD  G++  K  + E + D WL+
Sbjct: 162 FNLKEDMEEGDFDENGNFIRKNYDPESQYDAWLN 195


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -2

Query: 652  SFFITMMNFIFILWSTFYFNPVNVIKPSITNFFFFF--PMVMSLCIKMPFFKFFFHVK 485
            S F+T    I  L  T++  P      SI  F  F   P++ +L   + F KFF+ V+
Sbjct: 1031 SNFLTWEIIISDLTRTYHLIPRGSSTVSIILFSLFLVSPLICALATMLAFQKFFYQVR 1088


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 125 HKNINFIDSVPNTRQQTHN 181
           H+N++F +S+P    Q HN
Sbjct: 477 HRNLSFSESLPTAEDQVHN 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,237
Number of Sequences: 5004
Number of extensions: 42954
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)