Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P12
         (938 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-21|CAB55087.1|  370|Caenorhabditis elegans Hypothetical...    63   2e-10

>AL117202-21|CAB55087.1|  370|Caenorhabditis elegans Hypothetical
           protein Y47D3A.27 protein.
          Length = 370

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = +2

Query: 485 FNMKEELEEGHFDTQGHYHW-KKEKEIRDGWLDNIDWVKVKGRPEDKYKIHHXXXXXXXX 661
           FNMKE+ EEGHFD  G++ + KK K+++D WLD IDW  VK +  D+++           
Sbjct: 95  FNMKEDEEEGHFDETGNFIFDKKTKDVQDAWLDGIDWSLVKKKAGDQWEGDEDKKSLEDE 154

Query: 662 XXXXXXXXXXXXXXIHNYKEILQHMKPXETIAKAL 766
                         I  +++++  +KP +T+AKAL
Sbjct: 155 EPEPITMSDARKKEI--FEQLVNLLKPNQTVAKAL 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,422,239
Number of Sequences: 27780
Number of extensions: 231170
Number of successful extensions: 636
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)