Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P10
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    36   0.006
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    28   2.1  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    26   8.4  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 17/41 (41%), Positives = 28/41 (68%)
 Frame = +3

Query: 201 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRP 323
           PLE+ P+VL  +LQK+GV +  ++ D+  L+ E   ++PRP
Sbjct: 4   PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRP 42



 Score = 33.1 bits (72), Expect = 0.055
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +1

Query: 427 KYFLYETNISNACGTIALVHSVXXNTDXIELSDGHMQKFLNE---AKGLDATXXGKLXEK 597
           K   Y   I NACGTI L+H+V         S+G +++ +NE    K L  T  G   E+
Sbjct: 71  KVLWYPQTIPNACGTIGLLHAV---------SNGELRRKVNENDFIKSLIRTAEGSSIEE 121

Query: 598 SEXXINAXKEL 630
               I   KEL
Sbjct: 122 RAKLIEDSKEL 132


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 287 SHDIYNIPFVWYAELLQKLVQDIGIGFKRD*SFGRHFSHSNCGVDEGD 144
           +H   +  F W  E L + + DIG+    D S+G H   S    D GD
Sbjct: 133 AHSKIDKEFGWLLEDLDQEIDDIGVPGTEDPSYG-HSEDSEVSDDTGD 179


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
 Frame = +3

Query: 174 TEMATETLVPLESNPDVLNKFLQ-------KLGVPNKWNI-VDVMGLDPETLSWV 314
           ++  +E  +PLES PD L K +        K+G    W I V V    PE   W+
Sbjct: 318 SQHVSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPTPEDECWL 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,768
Number of Sequences: 5004
Number of extensions: 44458
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)