Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P10
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320...    52   5e-07
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244...    34   0.18 
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537...    29   6.6  
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086...    28   8.8  

>04_04_0697 +
           27331643-27331693,27331798-27331917,27332007-27332057,
           27332682-27332787,27333218-27333276,27333372-27333446,
           27333909-27333957,27334064-27334140,27334400-27334483
          Length = 223

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 22/42 (52%), Positives = 32/42 (76%)
 Frame = +3

Query: 198 VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRP 323
           +PLE+NP+V+N+F++ LGVP +    DV GLD E L+ VP+P
Sbjct: 6   LPLEANPEVMNQFMRGLGVPAEAGFCDVYGLDDEMLAMVPQP 47



 Score = 39.5 bits (88), Expect = 0.004
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +1

Query: 325 VLSVMLLFPXF*CLRKSQKN*RK*DSVQRARSFWKYFLYETNISNACGTIALVHSVXXNT 504
           VL+V+LL+P     RK +       +V+  +     +  +  I NACGT+ ++H++    
Sbjct: 48  VLAVILLYPQD---RKKESVASPSSTVESKKLSKNVYFTKQTIGNACGTVGIIHAIGNAL 104

Query: 505 DXIELSDG-HMQKFLNEAKGLDATXXGKLXEKSE 603
             I+L +G +  +F  +   +D        E+ E
Sbjct: 105 SRIKLVEGSYFDRFYKQTADMDPAQRASFLEEDE 138


>02_05_0168 +
           26423464-26423790,26423828-26423941,26424366-26424448,
           26424756-26424804,26425789-26425894,26426460-26426518,
           26426604-26426678,26427112-26427160,26427253-26427329,
           26427662-26427744,26427852-26427867
          Length = 345

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 430 YFLYETNISNACGTIALVHSVXXNTDXIELSDG-HMQKFLNEAKGLDATXXGKLXEKSE 603
           YF  +T + NACGT+ ++H++      ++L +G +  +F  +   +D        E+ +
Sbjct: 198 YFTKQT-VGNACGTVGVIHAIGNAASKLKLVEGSYFDRFYKQTVDMDPVQRAAFLEEDD 255


>09_04_0362 -
           16953108-16953155,16953478-16953562,16953626-16953702,
           16954601-16954641,16955140-16955644,16955897-16956316
          Length = 391

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 304 SVSGSSPMTSTIFHLFGTPSFCKNLFRTSG 215
           S   S+P +S++F    TP+   NLF TSG
Sbjct: 230 STPASAPSSSSLFSTPTTPTLSSNLFGTSG 259


>04_04_1513 -
           34107700-34107765,34108475-34108551,34108640-34108688,
           34109144-34109218,34109447-34109554,34109728-34109835,
           34110708-34111256
          Length = 343

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 448 NISNACGTIALVHSVXXNTDXIEL 519
           ++ NACGTIAL+H+V      I L
Sbjct: 230 SLGNACGTIALLHAVGNAYSEISL 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,557
Number of Sequences: 37544
Number of extensions: 253465
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)