Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P10
         (896 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145600-1|AAD38575.1|  227|Drosophila melanogaster ubiquitin ca...    65   1e-10
AE014134-356|AAF51291.1|  227|Drosophila melanogaster CG4265-PA ...    65   1e-10
X69679-1|CAA49359.1|  227|Drosophila melanogaster ubiquitin carb...    63   6e-10
X69678-1|CAA49358.1|  227|Drosophila melanogaster Ubiquitin carb...    63   6e-10
S60346-1|AAA15411.1|  227|Drosophila melanogaster ubiquitin carb...    63   6e-10
AY071563-1|AAL49185.1| 1220|Drosophila melanogaster RE63043p pro...    30   3.7  

>AF145600-1|AAD38575.1|  227|Drosophila melanogaster ubiquitin
           carboxy-terminal hydrolaseprotein.
          Length = 227

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 25/44 (56%), Positives = 34/44 (77%)
 Frame = +3

Query: 192 TLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRP 323
           T  PLESNP+VL K++ KLGV   W++ DV+GL+ +TL W+PRP
Sbjct: 3   TWTPLESNPEVLTKYIHKLGVSPAWSVTDVIGLEDDTLEWIPRP 46



 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 31/109 (28%), Positives = 43/109 (39%)
 Frame = +1

Query: 457 NACGTIALVHSVXXNTDXIELSDGHMQKFLNEAKGLDATXXGKLXEKSEXXINAXKELXX 636
           NACGT+AL+HSV  N + +++  G ++ FL +   L     G+  EK E      + L  
Sbjct: 91  NACGTVALIHSVANNKE-VDIDRGVLKDFLEKTASLSPEERGRALEKDEKFTADHEALAQ 149

Query: 637 XXXTNTPNX*KSPQXXFYXXFSXKXXXXXXXXGXKXXLXNXGPXXXENF 783
              TN  N  K      +     K        G K      GP   E F
Sbjct: 150 EGQTNAANHEK--VIHHFIALVNKEGTLYELDGRKSFPIKHGPTSEETF 196


>AE014134-356|AAF51291.1|  227|Drosophila melanogaster CG4265-PA
           protein.
          Length = 227

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 25/44 (56%), Positives = 34/44 (77%)
 Frame = +3

Query: 192 TLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRP 323
           T  PLESNP+VL K++ KLGV   W++ DV+GL+ +TL W+PRP
Sbjct: 3   TWTPLESNPEVLTKYIHKLGVSPAWSVTDVIGLEDDTLEWIPRP 46



 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 31/109 (28%), Positives = 43/109 (39%)
 Frame = +1

Query: 457 NACGTIALVHSVXXNTDXIELSDGHMQKFLNEAKGLDATXXGKLXEKSEXXINAXKELXX 636
           NACGT+AL+HSV  N + +++  G ++ FL +   L     G+  EK E      + L  
Sbjct: 91  NACGTVALIHSVANNKE-VDIDRGVLKDFLEKTASLSPEERGRALEKDEKFTADHEALAQ 149

Query: 637 XXXTNTPNX*KSPQXXFYXXFSXKXXXXXXXXGXKXXLXNXGPXXXENF 783
              TN  N  K      +     K        G K      GP   E F
Sbjct: 150 EGQTNAANHEK--VIHHFIALVNKEGTLYELDGRKSFPIKHGPTSEETF 196


>X69679-1|CAA49359.1|  227|Drosophila melanogaster ubiquitin
           carboxyl terminal hydrolaseprotein.
          Length = 227

 Score = 62.9 bits (146), Expect = 6e-10
 Identities = 24/44 (54%), Positives = 33/44 (75%)
 Frame = +3

Query: 192 TLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRP 323
           T  PLESNP+VL K++ KL V   W++ DV+GL+ +TL W+PRP
Sbjct: 3   TWTPLESNPEVLTKYIHKLAVSPAWSVTDVIGLEDDTLEWIPRP 46



 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 31/109 (28%), Positives = 43/109 (39%)
 Frame = +1

Query: 457 NACGTIALVHSVXXNTDXIELSDGHMQKFLNEAKGLDATXXGKLXEKSEXXINAXKELXX 636
           NACGT+AL+HSV  N + +++  G ++ FL +   L     G+  EK E      + L  
Sbjct: 91  NACGTVALIHSVANNKE-VDIDRGVLKDFLEKTASLSPEERGRALEKDEKFTADHEALAQ 149

Query: 637 XXXTNTPNX*KSPQXXFYXXFSXKXXXXXXXXGXKXXLXNXGPXXXENF 783
              TN  N  K      +     K        G K      GP   E F
Sbjct: 150 EGQTNAANHEK--VIHHFIALVNKEGTLYELDGRKSFPIKHGPTSEETF 196


>X69678-1|CAA49358.1|  227|Drosophila melanogaster Ubiquitin
           carboxyl terminal hydrolaseprotein.
          Length = 227

 Score = 62.9 bits (146), Expect = 6e-10
 Identities = 24/44 (54%), Positives = 33/44 (75%)
 Frame = +3

Query: 192 TLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRP 323
           T  PLESNP+VL K++ KL V   W++ DV+GL+ +TL W+PRP
Sbjct: 3   TWTPLESNPEVLTKYIHKLAVSPAWSVTDVIGLEDDTLEWIPRP 46



 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 31/109 (28%), Positives = 43/109 (39%)
 Frame = +1

Query: 457 NACGTIALVHSVXXNTDXIELSDGHMQKFLNEAKGLDATXXGKLXEKSEXXINAXKELXX 636
           NACGT+AL+HSV  N + +++  G ++ FL +   L     G+  EK E      + L  
Sbjct: 91  NACGTVALIHSVANNKE-VDIDRGVLKDFLEKTASLSPEERGRALEKDEKFTADHEALAQ 149

Query: 637 XXXTNTPNX*KSPQXXFYXXFSXKXXXXXXXXGXKXXLXNXGPXXXENF 783
              TN  N  K      +     K        G K      GP   E F
Sbjct: 150 EGQTNAANHEK--VIHHFIALVNKEGTLYELDGRKSFPIKHGPTSEETF 196


>S60346-1|AAA15411.1|  227|Drosophila melanogaster ubiquitin
           carboxyl terminal hydrolaseprotein.
          Length = 227

 Score = 62.9 bits (146), Expect = 6e-10
 Identities = 24/44 (54%), Positives = 33/44 (75%)
 Frame = +3

Query: 192 TLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRP 323
           T  PLESNP+VL K++ KL V   W++ DV+GL+ +TL W+PRP
Sbjct: 3   TWTPLESNPEVLTKYIHKLAVSPAWSVTDVIGLEDDTLEWIPRP 46



 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 31/109 (28%), Positives = 43/109 (39%)
 Frame = +1

Query: 457 NACGTIALVHSVXXNTDXIELSDGHMQKFLNEAKGLDATXXGKLXEKSEXXINAXKELXX 636
           NACGT+AL+HSV  N + +++  G ++ FL +   L     G+  EK E      + L  
Sbjct: 91  NACGTVALIHSVANNKE-VDIDRGVLKDFLEKTASLSPEERGRALEKDEKFTADHEALAQ 149

Query: 637 XXXTNTPNX*KSPQXXFYXXFSXKXXXXXXXXGXKXXLXNXGPXXXENF 783
              TN  N  K      +     K        G K      GP   E F
Sbjct: 150 EGQTNAANHEK--VIHHFIALVNKEGTLYELDGRKSFPIKHGPTSEETF 196


>AY071563-1|AAL49185.1| 1220|Drosophila melanogaster RE63043p
           protein.
          Length = 1220

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 331 KAPGRGTHESVSGSSPMTSTIFHLFGTPSFCKNL 230
           KAP   THES +G +P+ S    +F  PSF  N+
Sbjct: 675 KAPPAATHESSTGEAPLPS----VFDLPSFMNNM 704


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,550,072
Number of Sequences: 53049
Number of extensions: 447390
Number of successful extensions: 922
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4362070239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)