Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P10
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin c-t...    45   6e-05
AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin c-t...    42   8e-04
AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin c-t...    42   8e-04
AF125971-4|AAD14766.1|  381|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 1 protein.
          Length = 216

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 22/42 (52%), Positives = 25/42 (59%)
 Frame = +1

Query: 433 FLYETNISNACGTIALVHSVXXNTDXIELSDGHMQKFLNEAK 558
           F  +  ISNACGT AL HS+    D I L DG   K+L EAK
Sbjct: 76  FFMKQKISNACGTFALFHSLANLEDRINLGDGSFAKWLAEAK 117



 Score = 34.7 bits (76), Expect = 0.091
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +3

Query: 201 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETL 305
           PLESNP V+N  ++K+GV      VDV+  D E++
Sbjct: 7   PLESNPSVINPMIEKMGVSGV-KTVDVLFFDDESI 40


>AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 2 protein.
          Length = 249

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 21/49 (42%), Positives = 26/49 (53%)
 Frame = +3

Query: 204 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPGAFCNATFP 350
           LESNP+ +N FL K+GV      VDV   D E L ++P P       FP
Sbjct: 11  LESNPETINPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLALILCFP 58



 Score = 32.7 bits (71), Expect = 0.37
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +1

Query: 451 ISNACGTIALVHSVXXNTDXIELSDGHMQKFLNEAKGLDATXXGKLXEKSEXXINAXKEL 630
           I +ACGT +L HS+    + + L +G   K+  +AK +       L         A KE 
Sbjct: 92  IGHACGTFSLFHSLANLENRVNLGNGKFSKWFEKAKLVGEGERSDLLLADTDLAEAHKET 151

Query: 631 XXXXXTNTP 657
                T  P
Sbjct: 152 AEEGETEHP 160


>AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 3 protein.
          Length = 227

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 21/49 (42%), Positives = 27/49 (55%)
 Frame = +3

Query: 204 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPGAFCNATFP 350
           LESNP+ +N FL+K+G+      VDV   D E L +VP P       FP
Sbjct: 12  LESNPETINPFLKKIGITG-LECVDVYSFDDEMLQFVPTPQLALILCFP 59



 Score = 33.9 bits (74), Expect = 0.16
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 430 YFLYETN-ISNACGTIALVHSVXXNTDXIELSDGHMQKFLNEAK 558
           +F+ ++  I NACGT AL HS+    + + L  G   K+  +AK
Sbjct: 85  FFMNQSEEIGNACGTFALFHSLANLENRVNLGKGKFAKWYEKAK 128


>AF125971-4|AAD14766.1|  381|Caenorhabditis elegans Hypothetical
           protein Y4C6B.3 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +3

Query: 57  ATLILVRSLSFYYFENIIRF-VKLLPFY 137
           +TLIL+ + +  YF N+++F +K++ FY
Sbjct: 214 STLILIATYAPIYFRNVLKFDIKMIGFY 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,545,414
Number of Sequences: 27780
Number of extensions: 241982
Number of successful extensions: 600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)