Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P07
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490...    94   2e-19
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449...    81   1e-15
08_01_0001 - 14186-14288,14473-14590,14671-14727,14943-15010,151...    33   0.23 
02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152...    30   2.1  

>05_01_0562 +
           4907937-4907990,4908890-4909075,4909180-4909285,
           4909377-4909513,4909989-4910072,4910157-4910248,
           4910358-4910466,4910554-4910640,4910737-4910829,
           4911384-4911581,4911659-4911810,4911910-4912060,
           4912174-4912272,4912362-4912535,4912680-4912758,
           4912858-4912979
          Length = 640

 Score = 93.9 bits (223), Expect = 2e-19
 Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
 Frame = +1

Query: 304 GRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTLHRYGGFKEG 483
           G+ K+    + +K    GK  ++  +DI  V +     S+ L +  K G  +R+ GF+E 
Sbjct: 21  GQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSYQLGVSTKEGLFYRFFGFREQ 80

Query: 484 EQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCN 663
           +   +  F + N      EK+LS+ G NWG  + NG +LSFNVG+  AFE+ L  V+Q  
Sbjct: 81  DISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLSFNVGSKEAFEVSLADVAQTQ 140

Query: 664 -TGKNEVTLEFHQNDDTPG 717
             GK +V LEFH +D T G
Sbjct: 141 MQGKTDVVLEFHVDDTTGG 159


>01_01_0605 +
           4497308-4497472,4497719-4497904,4498898-4499003,
           4499062-4499216,4499341-4499424,4499498-4499589,
           4499729-4499837,4499944-4500030,4500153-4500245,
           4501144-4501341,4501481-4501632,4501724-4501874,
           4501975-4502073,4502159-4502326,4502624-4502702,
           4502870-4503000
          Length = 684

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 7/145 (4%)
 Frame = +1

Query: 304 GRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTLHRYGGFKEG 483
           G+ K+    + +K    GK  +I  +D+  V + K   ++ L +  K+G  +++ GF+E 
Sbjct: 58  GQFKVYSGGLAWKRQGGGKTIEIEKSDLTSVTWMKVPRAYQLGVRTKDGLFYKFIGFREQ 117

Query: 484 EQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFN------GAVLSFNVGTNTAFEIPLH 645
           +   +  F + N      EK+LS+ G NWG    N      G +L+F VG+  AFE+ L 
Sbjct: 118 DVSSLTNFMQKNMGLSPDEKQLSVSGQNWGGIDINVTLSIVGNMLTFMVGSKQAFEVSLA 177

Query: 646 YVSQCN-TGKNEVTLEFHQNDDTPG 717
            VSQ    GK +V LEFH +D T G
Sbjct: 178 DVSQTQMQGKTDVLLEFHVDDTTGG 202


>08_01_0001 -
           14186-14288,14473-14590,14671-14727,14943-15010,
           15104-15144,15405-15461,15980-16041,16833-16929,
           17016-17102,17171-17263,17394-17452,17653-17716
          Length = 301

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 547 LSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQ 657
           +SL+ +  GTA F G    F VG N +  I LHY+ +
Sbjct: 137 VSLQNFPVGTAAFLGTTKGFRVGLNLSLAIALHYIPE 173


>02_05_0962 +
           33114226-33114684,33114806-33114853,33115166-33115286,
           33115760-33116008,33116149-33116302,33116493-33116985,
           33117524-33117596,33118285-33118343
          Length = 551

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 738 KRISINDTRCVIILMKFECDFILSCIALRDIMQWYFKSGVCTNI 607
           +R  +N+TR  ++ + +  D I++ I L++   W+F    CTNI
Sbjct: 227 RRRILNNTRPPLLQLMWSKDIIVANITLKNSPFWHFHPYDCTNI 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,838,638
Number of Sequences: 37544
Number of extensions: 398974
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)