Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P07
         (887 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M86737-1|AAA58660.1|  709|Homo sapiens high mobility group box p...   170   5e-42
BC091486-1|AAH91486.1|  633|Homo sapiens SSRP1 protein protein.       170   5e-42
BC005116-1|AAH05116.1|  709|Homo sapiens structure specific reco...   170   5e-42
AB209132-1|BAD92369.1|  547|Homo sapiens structure specific reco...   110   6e-24

>M86737-1|AAA58660.1|  709|Homo sapiens high mobility group box
           protein.
          Length = 709

 Score =  170 bits (414), Expect = 5e-42
 Identities = 77/144 (53%), Positives = 104/144 (72%)
 Frame = +1

Query: 277 QK*KETWYQGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTL 456
           Q+ K +   GRL+++ Q IIFKNSKTGKV+ I A ++    +++     GL+L  KNG +
Sbjct: 12  QEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHV 71

Query: 457 HRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEI 636
           ++Y GF+E E EK++ FFK +Y  +++EK+L +KGWNWGT KF G +LSF++G    FEI
Sbjct: 72  YKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEI 131

Query: 637 PLHYVSQCNTGKNEVTLEFHQNDD 708
           PL  VSQC TGKNEVTLEFHQNDD
Sbjct: 132 PLSNVSQCTTGKNEVTLEFHQNDD 155



 Score = 58.4 bits (135), Expect = 3e-08
 Identities = 28/51 (54%), Positives = 38/51 (74%)
 Frame = +2

Query: 716 VSLMEMRFHIPTSEVANDLDAVEAXXXQVMNKASVISVSGDAIAIFRELQC 868
           VSLME+RF++P ++  + +D VEA    V++KA VI  +GDAI IFRELQC
Sbjct: 158 VSLMEVRFYVPPTQ-EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQC 207


>BC091486-1|AAH91486.1|  633|Homo sapiens SSRP1 protein protein.
          Length = 633

 Score =  170 bits (414), Expect = 5e-42
 Identities = 77/144 (53%), Positives = 104/144 (72%)
 Frame = +1

Query: 277 QK*KETWYQGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTL 456
           Q+ K +   GRL+++ Q IIFKNSKTGKV+ I A ++    +++     GL+L  KNG +
Sbjct: 12  QEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHV 71

Query: 457 HRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEI 636
           ++Y GF+E E EK++ FFK +Y  +++EK+L +KGWNWGT KF G +LSF++G    FEI
Sbjct: 72  YKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEI 131

Query: 637 PLHYVSQCNTGKNEVTLEFHQNDD 708
           PL  VSQC TGKNEVTLEFHQNDD
Sbjct: 132 PLSNVSQCTTGKNEVTLEFHQNDD 155



 Score = 58.4 bits (135), Expect = 3e-08
 Identities = 28/51 (54%), Positives = 38/51 (74%)
 Frame = +2

Query: 716 VSLMEMRFHIPTSEVANDLDAVEAXXXQVMNKASVISVSGDAIAIFRELQC 868
           VSLME+RF++P ++  + +D VEA    V++KA VI  +GDAI IFRELQC
Sbjct: 158 VSLMEVRFYVPPTQ-EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQC 207


>BC005116-1|AAH05116.1|  709|Homo sapiens structure specific
           recognition protein 1 protein.
          Length = 709

 Score =  170 bits (414), Expect = 5e-42
 Identities = 77/144 (53%), Positives = 104/144 (72%)
 Frame = +1

Query: 277 QK*KETWYQGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTL 456
           Q+ K +   GRL+++ Q IIFKNSKTGKV+ I A ++    +++     GL+L  KNG +
Sbjct: 12  QEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHV 71

Query: 457 HRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEI 636
           ++Y GF+E E EK++ FFK +Y  +++EK+L +KGWNWGT KF G +LSF++G    FEI
Sbjct: 72  YKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEI 131

Query: 637 PLHYVSQCNTGKNEVTLEFHQNDD 708
           PL  VSQC TGKNEVTLEFHQNDD
Sbjct: 132 PLSNVSQCTTGKNEVTLEFHQNDD 155



 Score = 58.4 bits (135), Expect = 3e-08
 Identities = 28/51 (54%), Positives = 38/51 (74%)
 Frame = +2

Query: 716 VSLMEMRFHIPTSEVANDLDAVEAXXXQVMNKASVISVSGDAIAIFRELQC 868
           VSLME+RF++P ++  + +D VEA    V++KA VI  +GDAI IFRELQC
Sbjct: 158 VSLMEVRFYVPPTQ-EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQC 207


>AB209132-1|BAD92369.1|  547|Homo sapiens structure specific
           recognition protein 1 variant protein.
          Length = 547

 Score =  110 bits (265), Expect = 6e-24
 Identities = 49/105 (46%), Positives = 73/105 (69%)
 Frame = +1

Query: 277 QK*KETWYQGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTL 456
           Q+ K +   GRL+++ Q IIFKNSKTGKV+ I A ++    +++     GL+L  KNG +
Sbjct: 216 QEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHV 275

Query: 457 HRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNG 591
           ++Y GF+E E EK++ FFK +Y  +++EK+L +KGWNWGT KF G
Sbjct: 276 YKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGG 320



 Score = 68.1 bits (159), Expect = 4e-11
 Identities = 30/47 (63%), Positives = 34/47 (72%)
 Frame = +1

Query: 568 WGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDD 708
           W +    G +LSF++G    FEIPL  VSQC TGKNEVTLEFHQNDD
Sbjct: 408 WISPFLTGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDD 454


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,932,933
Number of Sequences: 237096
Number of extensions: 2370191
Number of successful extensions: 7771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7768
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)