Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P07
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...   117   1e-26
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...   102   4e-22
AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z81549-11|CAB04470.1|  335|Caenorhabditis elegans Hypothetical p...    29   5.9  

>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score =  117 bits (282), Expect = 1e-26
 Identities = 54/136 (39%), Positives = 83/136 (61%)
 Frame = +1

Query: 304 GRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTLHRYGGFKEG 483
           G LK+T++++ FK  K GK   ++ +DI+ + +QK     GLR+ L +G  HR+GGFK+ 
Sbjct: 20  GTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKPGLRVGLNDGGAHRFGGFKDT 79

Query: 484 EQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCN 663
           + EK+  F  +N+++ + +  L +KGWN+G A+  G  + F+      FEIP   VS   
Sbjct: 80  DLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVEFSWEDKPIFEIPCTNVSNVI 139

Query: 664 TGKNEVTLEFHQNDDT 711
             KNE  LEFHQNDD+
Sbjct: 140 ANKNEAVLEFHQNDDS 155



 Score = 36.3 bits (80), Expect = 0.029
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +2

Query: 623 PLLKYHCIMSLNAIQERMKSHSNFIRMMTHLVSLMEMRFHIPTS-EVANDLDAVEAXXXQ 799
           P+ +  C    N I  + ++   F +     V LMEMRFH+P   E   D D VE     
Sbjct: 126 PIFEIPCTNVSNVIANKNEAVLEFHQNDDSKVQLMEMRFHMPIDLENEEDADKVEEFKKA 185

Query: 800 VMNKASVISVSGDAIAIFRELQC 868
           V+  A + + +   I +  ++ C
Sbjct: 186 VLAYAGLEAETEQPICLLTDILC 208


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score =  102 bits (244), Expect = 4e-22
 Identities = 49/136 (36%), Positives = 75/136 (55%)
 Frame = +1

Query: 304 GRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTLHRYGGFKEG 483
           G L +T+ +I F   K GK   I+  D++ + +QK     GLR+ L +G  HR+GGF + 
Sbjct: 20  GTLTLTENSINFIGDKGGKSVYITGTDVDKLKWQKLGNKPGLRVGLSDGGAHRFGGFLDD 79

Query: 484 EQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCN 663
           + +K+  F  +N++K + +  L + GWN+G A   G  + F+      FEIP   VS   
Sbjct: 80  DLQKIQSFTSSNWSKSINQSNLFINGWNYGQADVKGKNIEFSWENEPIFEIPCTNVSNVI 139

Query: 664 TGKNEVTLEFHQNDDT 711
             KNE  LEFHQN+ +
Sbjct: 140 ANKNEAILEFHQNEQS 155



 Score = 37.1 bits (82), Expect = 0.017
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +2

Query: 623 PLLKYHCIMSLNAIQERMKSHSNFIRMMTHLVSLMEMRFHIPTS-EVANDLDAVEAXXXQ 799
           P+ +  C    N I  + ++   F +     V LMEMRFH+P   E   D D VE     
Sbjct: 126 PIFEIPCTNVSNVIANKNEAILEFHQNEQSKVQLMEMRFHMPVDLENEEDTDKVEEFKKA 185

Query: 800 VMNKASVISVSGDAIAIFRELQC 868
           V+  A + + +   I +  ++ C
Sbjct: 186 VLAYAGLEAETEQPICLLTDILC 208


>AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical
           protein Y57A10B.4 protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 506 NFATFSCSPSLKPPYLCKVPFLRNKRKPHEPMNFWKFTSSMS 381
           + A   CSPS +  ++  +P +R  RKP  P++  KF+  +S
Sbjct: 304 SIALLFCSPSWRDAFIGGIPIIRRFRKP--PVSLRKFSQKVS 343


>Z81549-11|CAB04470.1|  335|Caenorhabditis elegans Hypothetical
           protein F55C9.13 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = +1

Query: 388 ELVNFQKFIGSWGLRLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKG-- 561
           E ++  + + S  L LFLK      Y   K       ++       KD+  KE ++K   
Sbjct: 178 EHLHVNQKMSSRDLNLFLKRWMRGEYKSLKSLRCHVGSEASADEIFKDVKYKEENVKSVI 237

Query: 562 -WNWGTAKFNGAVLSFNVGTNTAFEIPLHYVS 654
            WNWG  K    +  F+ GT     +   YV+
Sbjct: 238 QWNWGFMKVKRVIYRFD-GTRATCVLKYGYVT 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,151,536
Number of Sequences: 27780
Number of extensions: 401323
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)