Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P06
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    28   1.6  
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ...    27   2.8  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.8  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 79  KQIRCIHPDGLHQLK*DGNIKHHTFRCLLS 168
           + +RC+HP+    LK   N+ +H  +CL S
Sbjct: 4   RNLRCLHPNTFASLK--TNVSYHGVKCLAS 31


>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
           Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 202

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 128 MATLNTILFVVY*VLGAFVKAQRPXYAGLSPIGYPAV 238
           M+T NT+  V+Y   G  VK      AG+   G  AV
Sbjct: 1   MSTANTVAIVIYSTYGHVVKLAEAEKAGIEKAGGKAV 37


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 316 NQIAVXSDLDGSFLVFPESVR*XISLHGWIPYGTEAGVXRSLGFYKRSQNSV 161
           N  +V  DL  S+ ++  S    +S++ W PY  +    R    Y+ S+NSV
Sbjct: 224 NLSSVSCDLTDSYSLWDPSSSGLVSIYAWAPYLIDFNRIRFYN-YESSENSV 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,791
Number of Sequences: 5004
Number of extensions: 40799
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)