Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_P05
(1300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0904 + 20717005-20718087 45 1e-04
11_06_0610 - 25449085-25453284 35 0.12
12_02_1174 - 26696869-26698191 33 0.65
04_04_1125 + 31085106-31085714 33 0.65
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 31 1.5
10_07_0184 - 13894027-13894257 31 2.0
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 30 4.6
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 29 8.0
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 8.0
>04_03_0904 + 20717005-20718087
Length = 360
Score = 45.2 bits (102), Expect = 1e-04
Identities = 36/149 (24%), Positives = 50/149 (33%)
Frame = +3
Query: 417 QPRXTXTPXXXRXGNTAQRXPXXPXAXPPXTTXGPPAXXPRPHNXPQXTXQXRHXQRTPP 596
QP+ T TP + + P P T PP+ P+P P T + + PP
Sbjct: 181 QPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPNPPPTYKPQPKPNPPP 240
Query: 597 THXPXGXHPPTXTRXXXXXXXXXXXXAXXATPTSXPPPXKXXXXPPXXTTQXXHRXTXPX 776
T+ P PPT TPT PP P T + T
Sbjct: 241 TYKPA---PPTYKPQPKPNPPPTYKPQPKPTPTPYTPP-TYKPQPKPTPTPTPYTPTPKP 296
Query: 777 HXTRTXKHPRNXPXXAPSXSXAXXRRTPT 863
+ T K P+ P P+ + TP+
Sbjct: 297 NPPPTYK-PQPKPTPTPTPYKPQPKPTPS 324
Score = 35.9 bits (79), Expect = 0.070
Identities = 34/128 (26%), Positives = 38/128 (29%), Gaps = 3/128 (2%)
Frame = +3
Query: 486 PXAXPPXTTXGPPAXXPRPH-NXPQXTXQXRHXQR--TPPTHXPXGXHPPTXTRXXXXXX 656
P PP T PP P P P T + TPPT+ P PP T
Sbjct: 71 PAYTPPKPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPT-PTPPKPT--PPTYK 127
Query: 657 XXXXXXAXXATPTSXPPPXKXXXXPPXXTTQXXHRXTXPXHXTRTXKHPRNXPXXAPSXS 836
TPT PP K P T P T T P P P+ +
Sbjct: 128 PQPKPTPAPYTPTPTPPTYKPQPKPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPT 187
Query: 837 XAXXRRTP 860
TP
Sbjct: 188 PYTPTPTP 195
Score = 31.9 bits (69), Expect = 1.1
Identities = 34/147 (23%), Positives = 39/147 (26%)
Frame = +3
Query: 420 PRXTXTPXXXRXGNTAQRXPXXPXAXPPXTTXGPPAXXPRPHNXPQXTXQXRHXQRTPPT 599
P+ T TP P P PP T PP P P P + + PT
Sbjct: 76 PKPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTP--TPPKPTPPTYKPQPKPT 133
Query: 600 HXPXGXHPPTXTRXXXXXXXXXXXXAXXATPTSXPPPXKXXXXPPXXTTQXXHRXTXPXH 779
P P T PT P P PP Q P
Sbjct: 134 PAPYTPTPTPPTYKPQPKPTPPPTYKPQPKPT--PTPYTPTPTPPSYKPQP---KPTPTP 188
Query: 780 XTRTXKHPRNXPXXAPSXSXAXXRRTP 860
T T P P P+ + TP
Sbjct: 189 YTPTPTPPSYKPQPKPTPTPYTPTPTP 215
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 35.1 bits (77), Expect = 0.12
Identities = 32/138 (23%), Positives = 41/138 (29%), Gaps = 3/138 (2%)
Frame = +2
Query: 758 PXHXTXPXH-PXXXTPQEXTXRXPQXLXRXPQEDAHPVHXAXXTXPRXPX--PSPPGGXX 928
P + P H P P E P P + P A + P P PSPP G
Sbjct: 776 PEEKSPPPHSPEKSPPSEAHPTSP------PPSEKSPPTPAEESSPPTPEKSPSPPSGHE 829
Query: 929 GTAXXXXXSXTPXTXXXXRTXXHXXXGEPPPTXXXXXAXXHTRXPQRPPPAKTXXXXXXX 1108
GT S +P + PPP P++ PP
Sbjct: 830 GTPPSPVKSSSPPPEAHVSSPPPEKSSSPPPEAHVSSPP----PPEKSPPPPETKSPPTL 885
Query: 1109 XXXXAXXXXXSPPPNHTP 1162
+ PP+HTP
Sbjct: 886 TPEISPPPEGKSPPSHTP 903
>12_02_1174 - 26696869-26698191
Length = 440
Score = 32.7 bits (71), Expect = 0.65
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +3
Query: 477 PXXPXAXPPXTTXGPPAXXPRPHNXPQXTXQXRHXQRTPPTHXPXGXHPPTXTR 638
P P + PP PP PRP + Q + + PP+ P PP TR
Sbjct: 146 PQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPK--PQPPPSLQPPSPPPPPPTR 197
>04_04_1125 + 31085106-31085714
Length = 202
Score = 32.7 bits (71), Expect = 0.65
Identities = 24/77 (31%), Positives = 25/77 (32%)
Frame = +3
Query: 501 PXTTXGPPAXXPRPHNXPQXTXQXRHXQRTPPTHXPXGXHPPTXTRXXXXXXXXXXXXAX 680
P T PP P P P T TP T P PPT T A
Sbjct: 35 PTTKPPPPPCQPPP---PTPTPATPTTPPTPWTPPPATPTPPTPTPWTPTPATPPPTPAT 91
Query: 681 XATPTSXPPPXKXXXXP 731
ATPT+ P P P
Sbjct: 92 PATPTTPPTPAPAPSTP 108
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 31.5 bits (68), Expect = 1.5
Identities = 20/92 (21%), Positives = 25/92 (27%)
Frame = +3
Query: 498 PPXTTXGPPAXXPRPHNXPQXTXQXRHXQRTPPTHXPXGXHPPTXTRXXXXXXXXXXXXA 677
PP T GPP P N P + P +PP
Sbjct: 303 PPPQTWGPPPPWGHPSNVPPGGPGYGGNPQFMPPRPQDHYYPPPDVPPVEKQPHYGISSY 362
Query: 678 XXATPTSXPPPXKXXXXPPXXTTQXXHRXTXP 773
P + PP PP ++Q H P
Sbjct: 363 GRDAPPTGAPPASGNQHPPHGSSQITHSMQVP 394
>10_07_0184 - 13894027-13894257
Length = 76
Score = 31.1 bits (67), Expect = 2.0
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Frame = -1
Query: 622 GXXPXGXWVGGVR-----WXCLXWXVXCGXLCGRGXXAGGPXVVXGGXACGXXG 476
G G W GGV W CL W R AGG GG CG G
Sbjct: 20 GGGSVGGWSGGVAEEAAAWPCLQWQAVAVARSDRSAGAGGG--CGGGGGCGAGG 71
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +3
Query: 477 PXXPXAXPPXTTXGPPAXXPRPHNXPQXTXQXRHXQRT-PPTHXPXGXHPPTXT 635
P P PP P + P P P Q QRT P P G HP T
Sbjct: 1116 PPLPDDRPPSPPPLPSSPPPVPPPPPAPITQTGQLQRTLPMASDPVGPHPTRAT 1169
>11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 29.1 bits (62), Expect = 8.0
Identities = 20/75 (26%), Positives = 25/75 (33%)
Frame = +2
Query: 863 PVHXAXXTXPRXPXPSPPGGXXGTAXXXXXSXTPXTXXXXRTXXHXXXGEPPPTXXXXXA 1042
P A + P+ P PSPP + + TP P P A
Sbjct: 539 PSPPAPPSPPQDPAPSPPHDPLAPSLPQAPAATPPQDPALTPPRAPT---PTPPQAPLPA 595
Query: 1043 XXHTRXPQRPPPAKT 1087
+R P PPPA T
Sbjct: 596 PSKSRAPPTPPPAHT 610
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 29.1 bits (62), Expect = 8.0
Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 1/133 (0%)
Frame = +3
Query: 435 TPXXXRXGNTAQRXPXXPXAXPP-XTTXGPPAXXPRPHNXPQXTXQXRHXQRTPPTHXPX 611
TP + P P A PP + PP P P N P ++P
Sbjct: 50 TPADTTPTSPPPASPPLPSATPPLAASPPPPPPPPPPRNSPSPPKPPSQAAQSPLPPTTT 109
Query: 612 GXHPPTXTRXXXXXXXXXXXXAXXATPTSXPPPXKXXXXPPXXTTQXXHRXTXPXHXTRT 791
PPT +PT P + PP T P + +
Sbjct: 110 TTTPPTAPVPAAAPPPTAPSPYSAPSPTPTPTHTQPRPSPPLLPTPA--TAADPANPNKA 167
Query: 792 XKHPRNXPXXAPS 830
+HP + +P+
Sbjct: 168 -RHPSSNKSSSPA 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.131 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,213,917
Number of Sequences: 37544
Number of extensions: 352628
Number of successful extensions: 924
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4050598896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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