Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P05
         (1300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    33   0.58 
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    30   4.1  

>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 32.7 bits (71), Expect = 0.58
 Identities = 25/102 (24%), Positives = 29/102 (28%), Gaps = 3/102 (2%)
 Frame = +3

Query: 477 PXXPXAXPPXTTXGPPAXXPRPHNXPQXTXQXRHXQRTP---PTHXPXGXHPPTXTRXXX 647
           P    A PP TT  PP    +    P    +       P   P   P   +PP       
Sbjct: 185 PPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAP-APNPPAPENTTA 243

Query: 648 XXXXXXXXXAXXATPTSXPPPXKXXXXPPXXTTQXXHRXTXP 773
                    A    PT  P P      PP  TT    + T P
Sbjct: 244 KVETTKPTKAAPPAPTPVPNPVPSPPPPPANTTVTEEKTTVP 285


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
 Frame = +3

Query: 402 GXHNRQPRXTXTPXXXRXGNTAQR---XPXXPXAXPPXT--TXGPPAXXPRPHNXPQXT- 563
           G H   P     P   R G ++      P  P   PP +     PP   P P   P  T 
Sbjct: 116 GDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTP 175

Query: 564 --XQXRHXQRTPPTHXP 608
              + R+  RTPP+  P
Sbjct: 176 PSPEPRNPPRTPPSPIP 192


>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 28/96 (29%), Positives = 31/96 (32%)
 Frame = +3

Query: 456 GNTAQRXPXXPXAXPPXTTXGPPAXXPRPHNXPQXTXQXRHXQRTPPTHXPXGXHPPTXT 635
           GN ++R P      PP  T  PP   P P   PQ      +  R PP   P G   PT  
Sbjct: 183 GNASRRPPP-----PPKGTGTPP---PPPTGEPQDLSAEGYASRRPPP-PPKGTGSPTPP 233

Query: 636 RXXXXXXXXXXXXAXXATPTSXPPPXKXXXXPPXXT 743
                        A    P   PPP      PP  T
Sbjct: 234 PTGEPQDLSGEGNASRRPP---PPPKGTGSPPPPPT 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.131    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,746
Number of Sequences: 27780
Number of extensions: 226519
Number of successful extensions: 399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3621523944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)