Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P04
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   3.6  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   4.8  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    27   4.8  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   6.3  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    26   6.3  
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |...    26   8.3  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   8.3  

>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 562 RNCMCLHILSNLALVH-LQFVWNDCFLW 482
           RN   LH  S    VH L  +W++CFL+
Sbjct: 351 RNLKNLHYNSKKEFVHDLMLIWSNCFLY 378


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 235  DKHFQYRAILHRMFYKNDGPKLYLYFLL*EYQ--KTTFGLSLFNCSIFSFTH*KLGL 71
            DK+  Y  + HR+  + + PK+++   L +YQ     + LSL+N ++      ++GL
Sbjct: 842  DKNLDYFKVAHRIHEEVEQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGL 898


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 812 NCLFPDIALIHHYVQPXW 759
           N  FP +  +HHY  P W
Sbjct: 421 NANFPSVKKVHHYQYPNW 438


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 545 TYSKQPSSGSPSICVE*LFSLVFSNLYSFS 456
           +YS++P   SPS  ++  FS V S L  FS
Sbjct: 403 SYSEEPPQSSPSSTLQYTFSTVRSALSGFS 432


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +1

Query: 442 RLTKSLKEYKFENTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVGFMKNKSLVHSHCIS 621
           ++ K   EY  E T     +  I+G+ +L      STY F      F ++K+   SHC  
Sbjct: 191 KICKRYPEYTVEFTGCGLLNDLIDGD-DLLHFRPSSTYGFCTQIAVFHQSKNNAASHCFL 249

Query: 622 QSENT 636
           + +N+
Sbjct: 250 KDQNS 254


>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +1

Query: 250 PNYYDIGGTYYLEDLPDFWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISHGSETEIDKK 429
           P + D      + D  + +     E +  I  L   I++  +GS +    +    + D  
Sbjct: 15  PKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLEKIEKPFDGSVAAYHFNSIAFDNDAS 74

Query: 430 QKIVRLTKSLKEYKFENTR-ENSHSTQIEG 516
           Q+++   KSL E  FE  R E +  + ++G
Sbjct: 75  QRVIWRDKSLGEDDFEGMRSEKASGSSVQG 104


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 412 TEIDKKQKIVRLTKSLKEYKFENTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVG 579
           ++ID   ++ R  K ++  K +N R ++    +  E      +YV  +NF N  VG
Sbjct: 291 SKIDPSYRLERALKHIEVLKLKNYRISADRLSVIRET---LNQYVGVHNFHNFTVG 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,660,631
Number of Sequences: 5004
Number of extensions: 80615
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)