Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P04
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0123 + 4537231-4537366,4538088-4538171,4538432-4538586,453...    32   0.54 
09_04_0623 - 19038777-19040561                                         29   5.0  
05_07_0300 - 29081563-29081712,29082183-29082266,29082354-290823...    29   5.0  
10_08_0841 - 20948719-20948919,20949624-20950388,20950475-209510...    29   6.6  
08_01_0794 - 7687480-7687798,7687817-7688523                           29   6.6  
12_02_0534 - 20103908-20105897,20106314-20107116                       28   8.7  
01_06_0718 - 31467530-31467892,31468017-31468178,31468268-314684...    28   8.7  

>09_02_0123 +
           4537231-4537366,4538088-4538171,4538432-4538586,
           4539115-4539294,4539814-4540169,4540797-4540953
          Length = 355

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 478 NTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVGFMKNKSLVH 606
           ++++NSH  ++EG  E  CL Y    ++ +L V F   + + H
Sbjct: 74  SSQKNSHLQKLEGAKERLCLNYADVMDYDSLSVAFNGCEGVFH 116


>09_04_0623 - 19038777-19040561
          Length = 594

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 614 AFPSPKILNLN-VFDKLLTVHTFEGLLKNL 700
           A P    LNL  VFD++LTV T+ GL K++
Sbjct: 461 AAPKGSSLNLQGVFDRILTVATYGGLAKDM 490


>05_07_0300 -
           29081563-29081712,29082183-29082266,29082354-29082394,
           29082486-29082580,29082655-29082750,29082821-29082909,
           29082988-29083284,29083631-29083657
          Length = 292

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = -3

Query: 795 HRFDTSLCAAXMALCTLIFLHLQTTKVKSASSKFLSNPSKV*TVNNLSKTFRFSIFGLGN 616
           H F T   A   ++CTL F H+++  +               +++     F +SI+G G+
Sbjct: 5   HEFSTDSGALRNSVCTLEFFHMESPMLDQYRKPEAKKQQAAFSLSYTEHIFGYSIWGFGH 64

Query: 615 AMA 607
             A
Sbjct: 65  RPA 67


>10_08_0841 -
           20948719-20948919,20949624-20950388,20950475-20951023,
           20951097-20951237,20951313-20951519,20951556-20951724,
           20951899-20952003,20952087-20952208,20952291-20952412,
           20953234-20953516
          Length = 887

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +1

Query: 271 GTYYLEDLPDFWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISHGSETEIDKKQKIVRLT 450
           GT+   D P+F  T +     DI+   I I R   G  ++ I+   E  +DK +  + + 
Sbjct: 688 GTFAYMD-PEFLTTGELTARSDIYSFGIIILRLVTGKPALGIAREVEVALDKGELELLVD 746

Query: 451 KSLKEYKF 474
           +S  ++ F
Sbjct: 747 RSAGDWPF 754


>08_01_0794 - 7687480-7687798,7687817-7688523
          Length = 341

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/41 (46%), Positives = 21/41 (51%)
 Frame = +2

Query: 668 VHTFEGLLKNLEDADFTLVV*RWRKIRVHKAXLAAHSDVSK 790
           +  F  LL+  E AD T VV    KI  HK  LAA S V K
Sbjct: 177 LENFGELLEKGEGADVTFVV-GGEKIAAHKIVLAARSSVFK 216


>12_02_0534 - 20103908-20105897,20106314-20107116
          Length = 930

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 566 LEKLYVLTYSKQPSSGSPSICVE*LFSLVFSNLYSFSD 453
           LE+LY+  +++    G   + +E L+SL  + +YSF D
Sbjct: 866 LERLYLSIWTRLRRGGLNDLGLENLYSLRHATIYSFDD 903


>01_06_0718 -
           31467530-31467892,31468017-31468178,31468268-31468415,
           31468536-31468612,31468693-31468763,31468965-31469051,
           31469138-31469602,31470357-31470659,31471151-31471202
          Length = 575

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = +1

Query: 295 PDFWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISHGSETEIDKKQKIVRLTKSLKEYKF 474
           P++  T K     D+F   + +     G   I +SHG + +         L ++++E  F
Sbjct: 356 PEYAATGKVNDRSDVFSFGVMLLELITGKKPIMVSHGDQPDTLVSWARPLLVRAVEEENF 415

Query: 475 E 477
           E
Sbjct: 416 E 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,324,060
Number of Sequences: 37544
Number of extensions: 428658
Number of successful extensions: 859
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)