Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P02
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.66 
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce...    28   2.0  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    27   2.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.5  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   6.2  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   6.2  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   8.2  

>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 616 MASRRVRNRSRNKLAILSLMRLIRWYISRNFSHI 515
           MASR +RN   + L +L++  LI WYI   F HI
Sbjct: 157 MASR-IRNIG-SALFVLTIFPLIYWYIQHKFKHI 188


>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 139

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -2

Query: 589 SRNKLAILSLMRLIRWYISRNFSHISAGSIMSSLSFRQRVV*SKSVTILRCSTKY 425
           S + +   SL ++IR  ++ NF  +  G + SSL+ +     + S  ILR S ++
Sbjct: 29  SDSSITTSSLSKIIRTMVAENFGDVGIGKVASSLTVKY-FSPNTSTGILRVSRQH 82


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 602 CTKSIAKQVSNIVVNAIDSLVYF*KFFTYFSRKYYVFLEFSP 477
           CT+     V  +  N++D  +     F Y  R Y+++L+ SP
Sbjct: 209 CTEKAVAMVYTVEQNSLDDHLVDKVLFDYLVRTYHLYLDESP 250


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 321 SNYVLQMSLLKPANLYHFARFLPTYTMKSFHK*TTHFYRT 202
           + +V   +++ P    +   F+PT T  S H  TT FY T
Sbjct: 137 TTHVNTTTVVPPTTHANTTSFVPTTTESSIHPITTGFYNT 176


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 518 YFSRKYYVFLEFSPASCMIQICYYIKMFN*IFQTYLK*GIW 396
           +  R   +FL FSP  CM+ I +    +  +F T    G+W
Sbjct: 721 FLDRLAILFLTFSPTMCMLSISFEALFYVVLFITL---GLW 758


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 483 KLKEDIILPAEICEKFLEIYQRINRINDNIANLF 584
           ++ E+ +      + FL   Q +NR ND I NLF
Sbjct: 342 RVSEEKLANVRTTQAFLGERQEVNRYNDYIRNLF 375


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 237 TSLCMWVRISRNDINW 284
           T   +W RI RNDI W
Sbjct: 820 TVKAIWARIERNDIGW 835


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,582,950
Number of Sequences: 5004
Number of extensions: 74281
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)