Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P02
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1019 - 10290820-10291393,10293978-10294348                       31   1.6  
04_04_1667 + 35211776-35212132,35212640-35212727,35213573-352137...    31   1.6  
12_02_0162 - 14677634-14678003,14679359-14679420,14680785-14681000     29   3.7  
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300...    29   3.7  
09_02_0548 - 10467342-10468810,10470309-10471632                       29   3.7  
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772...    29   4.9  
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    28   8.6  

>08_01_1019 - 10290820-10291393,10293978-10294348
          Length = 314

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +3

Query: 546 RINRINDNIANLFRDRFRTRLDAIKLRNSRITDEGFRFLME---HKPQEVELIQCEYLSP 716
           R+   +D+      +R   +L  + +R+S    +   F++    H   E+++  C  +S 
Sbjct: 109 RVRHCSDDALAFAAER-SPKLSILSIRSSPSVSDRSMFIVASSCHMLTELDISYCHEVSY 167

Query: 717 MSLETINRNSRNLVSLK 767
            SLE I +N RNL  LK
Sbjct: 168 KSLEMIGQNCRNLNVLK 184


>04_04_1667 +
           35211776-35212132,35212640-35212727,35213573-35213705,
           35213806-35214616
          Length = 462

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
 Frame = +3

Query: 471 TRWRKLKEDIILPAEICEKF-LEIYQRINRINDNIANLF--RDRFRTRLDAIKLRNSRIT 641
           T WR + +DI+   E C K    +  +     D +   F  RD+ +         +S + 
Sbjct: 92  TTWRDMCKDIVRNPEFCGKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVL 151

Query: 642 DEGFRFLMEHKPQEVELIQCEYLSPMSLETINRNSRNLV 758
           DE  +FL+  K +       +Y+  M  + I+R+S   +
Sbjct: 152 DETGKFLLSAK-RSRRTTHTDYIISMDSKNISRSSSGYI 189


>12_02_0162 - 14677634-14678003,14679359-14679420,14680785-14681000
          Length = 215

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 343 TGWRTKWWRRLLRCTIP-HQIPYLRYVWNI*LN 438
           T  R  WWR  L C  P + I   +YVW I L+
Sbjct: 56  TSTRRSWWREGLACEAPINDISKGKYVWKIKLD 88


>10_06_0127 -
           11027692-11027826,11027925-11027993,11029925-11030011,
           11030146-11030286
          Length = 143

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = -2

Query: 715 GERYSHCMSSTSCGLCSIRNRNPSSVMRELRSFMASRRVRNRSRNKLAILSLMRLIRWYI 536
           GE    C++ T      + +RN   V R   S      V N   N+LAIL  + L+   +
Sbjct: 34  GEIVRKCLARTDHQCSFVEHRNYKVVYRRYASLFFLVGVDN-DENELAILEFIHLLVETM 92

Query: 535 SRNFSHISAGSIMSSL 488
            R+F ++    IM  L
Sbjct: 93  DRHFGNVCELDIMFHL 108


>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 375 TSLYDTSPDSLLEICLEYLVEHLNIVTDLDHTTRWRKL 488
           T+L+D  PD LLE+ L+ L   L++V       RWR++
Sbjct: 40  TTLHDV-PDKLLELILQNLDSSLSLVRAAATCQRWRRV 76


>09_04_0579 +
           18676165-18676524,18676846-18677058,18677136-18677288,
           18677503-18677622,18677696-18677782,18677876-18678313
          Length = 456

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +3

Query: 324 IVSRFKDRMA--HKVVAEITSLYDTSPDSLLEICLEYLVEHLNIVTDLDHTTRWRKLKED 497
           ++S+ K  M+   ++V E+T    TS  +L   C E  V   N++ D+  T+      E 
Sbjct: 297 VISKLKKDMSALKQMVVELTRAKRTSSVNLSTSCSELPVMSSNVLYDMSSTSPSSSDSES 356

Query: 498 IILPAEICEKFLEI 539
            + P E  +  L++
Sbjct: 357 PVAPREYLDDHLKV 370


>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +3

Query: 474 RWRKLKEDIILPAEIC----EKFLEIYQRINRINDNIANLFRDRFRTRLDAIKLRNSRIT 641
           +W+  +ED +   EI     E  LEI  R  R+ D  A+L R  +R +L       S+I 
Sbjct: 123 KWKLSEEDGMERLEIAHIRMEAALEISSRWPRVTD--ASLLR--WRKKLKRTSDECSQIM 178

Query: 642 DEGFRFLMEHKPQEVELIQCEY 707
           D   R  ME    E E+ QC +
Sbjct: 179 DRCKRRAMEDDEMEQEVRQCAF 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,914,064
Number of Sequences: 37544
Number of extensions: 423244
Number of successful extensions: 997
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)