Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P01
         (946 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    31   1.0  
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178...    31   1.0  
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648...    29   4.1  

>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 473 FXFFXXFXCSLNRPILHNIWI*EQTTQA-IYLVSGL 369
           F FF     SL  P++HN+WI   T  A  Y  +GL
Sbjct: 278 FLFFGYIGVSLLSPVMHNLWIWRGTGNANFYFATGL 313


>01_06_1488 +
           37716986-37717076,37717424-37717558,37717755-37717831,
           37717934-37718181,37718503-37718559,37718665-37718800,
           37718944-37719001,37719110-37719195,37719270-37719326,
           37719537-37719557,37720553-37720954,37721500-37721647,
           37721940-37722036,37724065-37724202,37724496-37724598,
           37724792-37724828,37724905-37725014,37725141-37725164
          Length = 674

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 473 FXFFXXFXCSLNRPILHNIWI*EQTTQA-IYLVSGL 369
           F FF     SL  P++HN+WI   T  A  Y  +GL
Sbjct: 274 FLFFGYIGVSLLSPVMHNLWIWRGTGNANFYFATGL 309


>12_02_1170 -
           26663491-26663602,26663999-26664104,26664613-26664816,
           26664914-26665076,26665196-26665317,26665702-26665969
          Length = 324

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 393 GNIFSFR-FTPCV*ASLLGRPASSPXXYPCTFYCLHRSSRNCMLQEHPDQ 247
           GN+  FR   PC    +LG P S+     CT+Y     SR+ +     DQ
Sbjct: 211 GNMHRFRAIAPCAILDILGPPYSTEDGRDCTYYRAIPYSRHSVKNGAADQ 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,912,988
Number of Sequences: 37544
Number of extensions: 263273
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)