Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_P01
         (946 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032627-21|CAD66221.1|  289|Caenorhabditis elegans Hypothetical...    29   4.8  
U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protei...    28   8.5  

>AL032627-21|CAD66221.1|  289|Caenorhabditis elegans Hypothetical
           protein Y41C4A.19 protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +1

Query: 727 PXXXESANAPGEXAVXXXXAXXPXFPPQXXRXGPRVLSGLAGQPG 861
           P     A APG+  V       P  P Q    GP   SG  G PG
Sbjct: 181 PGHPGQAGAPGQPGVDAQSQSTPGAPGQAGPQGPPGSSGAPGAPG 225


>U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protein
           140, isoform a protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 793 PXFPPQXXRXGPRVLSGLAGQPGXXPNXXRAGK 891
           P  P +    GPR  +G AGQPG   N   +GK
Sbjct: 213 PGQPGRPGPPGPRGEAGPAGQPGSPGNDGESGK 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,054,305
Number of Sequences: 27780
Number of extensions: 225534
Number of successful extensions: 550
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)