Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O24
         (983 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    29   6.7  
Z92847-3|CAB07422.2|  323|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical protein
            T16G12.5 protein.
          Length = 1142

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +1

Query: 178  PKEDNSLNTLAESAKKTIEELREKVESALAP----ETVKKNFGTMVDSXFEFYKNLKPAE 345
            P ED S N   + AKK + +L+  V    AP     T ++ +   VD   E+ + L   E
Sbjct: 834  PSEDVSFNLAVDEAKKLLRDLKIDVNQVNAPTLPQRTDRQRYNQQVDVCNEWIEELHDDE 893


>Z92847-3|CAB07422.2|  323|Caenorhabditis elegans Hypothetical
           protein H01G02.2 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 178 PKEDNSLN--TLAESAKKTIE--ELREKVESALAPETVKKNFGTMVDSXFEFYKNLKPAE 345
           P EDN  N  T+ ++ K   E  E R      L  + +  NF   + S  +F+K LK +E
Sbjct: 224 PNEDNWPNWRTMPDANKLLFEPKEPRNNWTEILLCKEISNNFTEFLGSHLQFFKRLKASE 283

Query: 346 APK 354
             K
Sbjct: 284 LLK 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,993,336
Number of Sequences: 27780
Number of extensions: 165119
Number of successful extensions: 486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)