Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_O23
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741... 31 1.6
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 30 2.8
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 29 3.8
05_04_0142 - 18372751-18373338 29 5.0
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.6
11_01_0463 + 3594527-3594862 28 8.7
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.7
06_03_0218 + 18219956-18220555 28 8.7
06_01_0438 + 3110703-3111945,3112486-3113057 28 8.7
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.7
03_04_0061 - 16949038-16950006 28 8.7
>06_01_0964 -
7417158-7417517,7417596-7417868,7418400-7418810,
7419270-7419347
Length = 373
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = +2
Query: 629 GSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSVVGRSLQAG 775
G SL + LP + Y S P SV L HSS C + S V L+AG
Sbjct: 124 GDSLPSYYISGLPKS-YYSRLFPRQSVHLFHSSYCLHWRSQVPEGLEAG 171
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 631 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 512
SRGK L+S + R PP + + V+ + GGG G P T
Sbjct: 25 SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +2
Query: 629 GSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSVVGRSLQAGLCARTPVQPDR 808
GS V++ P LPL L PSG + Y+ S G+ L + + P +P +
Sbjct: 51 GSITVKANDPALPLADQLIVMSPSGVQKERMVAEDMYVLSADGKVLSSPVSKPWPNKPPK 110
Query: 809 C 811
C
Sbjct: 111 C 111
>05_04_0142 - 18372751-18373338
Length = 195
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -2
Query: 781 TQPSLERTTYNRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVSL* 602
T S ++Y T + R E+GG G++QGR R+A A R +RL +
Sbjct: 36 TSGSAASSSYPSTSGSAGSSSSGRRVEEEEQGGGGGGRKQGRRRKAVARAIR-ERLPAAV 94
Query: 601 SC 596
+C
Sbjct: 95 AC 96
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 347 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 502
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>11_01_0463 + 3594527-3594862
Length = 111
Score = 28.3 bits (60), Expect = 8.7
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Frame = -3
Query: 819 DKAQRSG*TGVRAHSPAWSERPTTEL--------RYLQREL*ESATLPEGRKADRYPVSG 664
++ +R G TG A W ERPT + ++R ES + P R+
Sbjct: 32 EEEKRGGRTGATASGDRWEERPTARRDRLGLEPGKEMERRRSESLSAPRARRLPGTCNGE 91
Query: 663 RVGTGERTR-ELPGGNAWYL 607
G G+ R E G AW L
Sbjct: 92 EGGGGKAARTEEERGAAWLL 111
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 296 NESAN---ARGEAVCVLGALPLPRSLTRCAR 379
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 703 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 608
+RRE+ + +G KR+GR R G RGKR S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 151 HCILVVVCPNSSMYLIMSXSN*PSAKGRSAAAVP 50
HC + +VC +S+ L++S P+ ++AA+P
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 724 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 623
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 598 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 714
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,198,723
Number of Sequences: 37544
Number of extensions: 541634
Number of successful extensions: 1783
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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