Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O21
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   2.1  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   4.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
 Frame = +3

Query: 462 HYFDRFRGDFE-STFSVPVSPQKPNQAE-----TTV----EKPLSSWPLPGA 587
           +Y +RF G++E     +P S  + +        TTV    E+PL S PLPGA
Sbjct: 432 YYGNRFSGEYEIPAHGLPPSATRYDLGAVATVGTTVAPCFEEPLPSLPLPGA 483


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 536 LVRLLRGYRNGESTFKISSKSVEV 465
           +++LLR ++NG   F +  K +E+
Sbjct: 72  IMKLLRTFKNGNFDFDMIVKQLEI 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,166
Number of Sequences: 438
Number of extensions: 4586
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)