Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O18
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    33   0.056
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    29   0.90 
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    28   2.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   2.8  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   2.8  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   8.4  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    26   8.4  

>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +1

Query: 190 LKTLRLSFADFSNLPDIKKLNAVRTVEKTIDNNTSIFVESPIHVKIQPIDVNDLNAHNKL 369
           LKT  +SF +   LPD     AV  +++T  +N SI +  PI +  Q +DV+      + 
Sbjct: 584 LKTNSMSFGELECLPDHMTKAAVDRIKRTGYDNDSIILSGPI-ITEQDVDVSINRIRKEK 642

Query: 370 TMTLYS 387
           + T+++
Sbjct: 643 SNTIFT 648


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 24/105 (22%), Positives = 46/105 (43%)
 Frame = +1

Query: 286  NTSIFVESPIHVKIQPIDVNDLNAHNKLTMTLYSHGKDASDFQVKQTSKRLELLNKNTAS 465
            NTS  V+S +  +   +   DL A  K+   +  HG    D ++   SK+ ++ N +T  
Sbjct: 789  NTSFPVDSKLAFQSLDVSQPDLQAKQKIASQVMKHGLKPEDLKL-PPSKKKKIENLSTVQ 847

Query: 466  DKNDVCLIQVPYQLKVQVSTSDNASVHLSKLEGDEFIVKTQKGAV 600
               D  ++  P  +   V     +SV    +  +E + K ++ A+
Sbjct: 848  KPKD-SVVNTPDVIMSSVDEIP-SSVSPGTIAKEEGMAKAREEAI 890


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query: 374 IVSLLCAFK--SFTSMG*ILTCMGLSTKILVLLSIVFSTVLTAFNFFISGKL 225
           +++ LC F+    T +G  +T   +  ++ V LSI+   +   F+FF +G+L
Sbjct: 154 VIAALCHFRRPELTVVGEEVTVHPVEERVPVPLSILHMPICVTFSFFNNGEL 205


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 365 LLCAFKSFTSMG*ILTCMGLSTKILVLLSIVFSTVLTAFNFFI 237
           L+C F S+  MG   TC      IL  L I     L  FN+++
Sbjct: 215 LMCDFCSYILMGLAWTCWPKVNIILQFLRIFGGIALIVFNYWV 257


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 217 DFSNLPDIKKLNAVRTVEKTIDNNTSIFVESPIHVKIQPIDVNDLNAHNKLTMTLYSHGK 396
           D+S++PD + +      E    N   I + + IH+ I  I+ +D NA N    TL+   K
Sbjct: 85  DWSSMPDDETITEDSEEETFNGNANEITIPANIHIPI--IEESD-NASNNKLCTLFKKSK 141

Query: 397 DAS-DF-QVK 420
             + DF Q+K
Sbjct: 142 QPNLDFLQIK 151


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/60 (21%), Positives = 26/60 (43%)
 Frame = +1

Query: 172 RHLHKVLKTLRLSFADFSNLPDIKKLNAVRTVEKTIDNNTSIFVESPIHVKIQPIDVNDL 351
           +H++K+L     S   F N P    +     ++  I  N  I  +    +++  +D +DL
Sbjct: 186 QHIYKILTLTPASLDSFQNRPPYIGITTFPNLQHCIKKNQPILKQFTSQLQLLIVDESDL 245


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 433 RLELLNKNTASDKNDVCLIQVPYQLKVQVSTSDNASVHLSKLE 561
           +LE+L K     +ND  ++ VPY       T   A  HL  LE
Sbjct: 222 KLEMLEKERIVVENDSFIVVVPYWALWPFETLLIAKEHLKSLE 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,115,769
Number of Sequences: 5004
Number of extensions: 57718
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)