Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O18
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1056 + 10752363-10752503,10752711-10752771,10753483-107536...    33   0.24 
02_02_0212 - 7915358-7915431,7915515-7916127                           31   1.7  
11_06_0182 + 20997071-20997832,20998010-20998150                       29   3.8  
10_07_0117 + 13028336-13028404,13029073-13029174,13031108-130313...    29   3.8  
11_06_0092 + 19973364-19975983,19976272-19976648                       28   8.8  

>08_01_1056 +
           10752363-10752503,10752711-10752771,10753483-10753620,
           10754667-10754883,10755760-10755861,10756030-10756133,
           10756383-10756483,10756563-10756607,10756724-10756855
          Length = 346

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +1

Query: 259 RTVEKTIDNNTSIFVESPIHVKIQPIDVND-LNAHNKLTMTLYSHGKDASDFQVKQTSKR 435
           R + K  D       E+ +  K   + VN+ L  H +L   L  H  D ++ ++++  KR
Sbjct: 250 RQIMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLEDH-VDVTNSRLQRVQKR 308

Query: 436 LELLNKNTASDKNDVCLI 489
           L +LNK T    + +CL+
Sbjct: 309 LAILNKRTKGGCSCMCLL 326


>02_02_0212 - 7915358-7915431,7915515-7916127
          Length = 228

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +1

Query: 322 KIQPIDVNDLNAHNKLTMTLYSHGKDASDFQVKQTSKRLELLNKNTASDKNDVCLIQVPY 501
           KIQ +D +D+N  N +T+T      D  +F+      R + LN    + K  V  +Q  Y
Sbjct: 20  KIQQLDQSDVNEGNVMTITPDKLTPDQKEFEAMMQQARNQFLNSFMQTRKGTV--VQ-KY 76

Query: 502 QLKVQVSTSDNAS 540
           Q++V       +S
Sbjct: 77  QVRVVADVPGTSS 89


>11_06_0182 + 20997071-20997832,20998010-20998150
          Length = 300

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 526 KLKPELLAGKVPESDTRRFYLRRCSCLTILAVWKS 422
           K+ P+++ GKV +      Y+   SC  +L +W+S
Sbjct: 182 KVAPKIVMGKVKDFLYENIYIVEASCGNLLQIWRS 216


>10_07_0117 +
           13028336-13028404,13029073-13029174,13031108-13031367,
           13031813-13031882,13031935-13031966,13032736-13032823,
           13033431-13033742,13033822-13033896,13034018-13034559,
           13034936-13035044,13035713-13035892,13036243-13036404
          Length = 666

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 2/149 (1%)
 Frame = +1

Query: 397 DASDFQVKQTSKRLELLNKNTASDKNDVCLIQVPYQLKVQVSTSDNASVHLSKLEG-DEF 573
           D     +++++  +E +N+ T    N  C       L    +      V + K  G D F
Sbjct: 90  DLKAIGIQRSNHEVEFINRETGQTCNKKCRADSETILGFFWTDCPTCDVIIIKTSGLDLF 149

Query: 574 IVKTQKGAVNVKDIKAQNIKIXXXXXXXXXXXRIQASNIE-LKTGLNXGIKCHNVMANXF 750
             + Q  A+++ D K  N +            RI    ++ +   LN      + +    
Sbjct: 150 AYEPQSNALHLVDSKKIN-ECNAHYLLDISYGRIYCLQLDRVSMTLNLYRFYRDAVVQQG 208

Query: 751 IVSTHAGPIAVSHVXVIITFHNIDGYXVL 837
            + T++  IAVS V  II  H ID   V+
Sbjct: 209 TLPTYSSRIAVSAVDNIIMVHQIDAKVVI 237


>11_06_0092 + 19973364-19975983,19976272-19976648
          Length = 998

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
 Frame = +1

Query: 166 GRRHLHKVLKTLRLSFADFSNL--PDIKKLNAVRTVEKTIDNNTS 294
           GRRH H+V+K LRL  ++ + +  P +  L+ +RT++ + DN+ S
Sbjct: 73  GRRHPHRVVK-LRLRSSNLAGIISPSLGNLSFLRTLQLS-DNHLS 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,469,326
Number of Sequences: 37544
Number of extensions: 314641
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)