Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_O17
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1430 - 26503732-26504754 33 0.30
01_06_1412 - 37140654-37141088,37141549-37142214 32 0.70
05_05_0022 + 21592403-21593083,21593720-21594208 31 1.6
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 29 3.8
09_06_0261 - 21919017-21920594 29 5.0
04_04_0157 + 23165638-23166633 29 5.0
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502... 28 8.7
06_01_0063 - 534138-534605 28 8.7
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 28 8.7
>07_03_1430 - 26503732-26504754
Length = 340
Score = 33.1 bits (72), Expect = 0.30
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +3
Query: 150 RDQESSDKKLDTSDYENLISHHSIFESSRSKQELPSFPGILKCRNANKT**HKRAKCSTV 329
+D E+ DK LD Y N++SH +F+S + P ++ ++ ++ + V
Sbjct: 259 QDVETPDK-LDNKYYRNVVSHRVLFKSDAALLASPETRSLVSSYAESQRQWEEKFAAAMV 317
Query: 330 RTGGVALQSMVD 365
+ GGV +++ D
Sbjct: 318 KMGGVGVKTAAD 329
>01_06_1412 - 37140654-37141088,37141549-37142214
Length = 366
Score = 31.9 bits (69), Expect = 0.70
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 581 AAVCRKLFHCPHCR--KSYPTILEFNTHLTGVHPSQKPFRCQICLEPFHKKSHLRRH 745
AA C+ P R K + T+ TH H + KPFRC+ C +PF K R H
Sbjct: 256 AAGCKNNVAHPRARPLKDFRTL---QTHYKRKHGA-KPFRCRRCAKPFAVKGDWRTH 308
>05_05_0022 + 21592403-21593083,21593720-21594208
Length = 389
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 581 AAVCRKLFHCPHCR--KSYPTILEFNTHLTGVHPSQKPFRCQICLEPFHKKSHLRRH 745
AA CR P R K + T+ TH H + KPF C+ C +PF K R H
Sbjct: 264 AAGCRNNVGHPRARPLKDFRTL---QTHYKRKHGA-KPFACRRCAKPFAVKGDWRTH 316
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 674 DEHLSSGY*TPILLDNFFYNEGNEIACGKLLR*SHKMDLSN-RHKKYLSLLEVWKYLPEI 498
DE LSS + NE + CG +++ H+ L + R+K+YL + WK LP
Sbjct: 277 DEFLSSEDYKKMEYTQHVINEA--LRCGNIVKFVHRKALKDVRYKEYL-IPSGWKVLPVF 333
Query: 497 ALVH 486
+ VH
Sbjct: 334 SAVH 337
>09_06_0261 - 21919017-21920594
Length = 525
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 605 HCPHCRKSYPTILEFNTHLTGVHPSQKPFRCQICLEPFHKKSHLRRH 745
HCP CR L H+T P F C ICL+P+H + R+
Sbjct: 293 HCPKCRLPIEKNLGC-MHMTCRPPCLHEF-CWICLKPWHGHAACSRY 337
>04_04_0157 + 23165638-23166633
Length = 331
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 695 CQICLEPFHKKSHLRRHLDALHTRK 769
C++C F + L RH DA+H R+
Sbjct: 106 CRVCGRRFRARDTLLRHFDAIHARE 130
>11_06_0197 +
21149453-21149630,21149930-21149996,21150142-21150244,
21150901-21150971,21151091-21151154,21151239-21151304,
21151416-21151463,21151544-21151606,21151680-21151736,
21151884-21151950,21151969-21152042,21152176-21152244,
21152323-21152414,21152782-21152860,21153233-21153398,
21153826-21153950,21154089-21154351,21154473-21154569,
21154659-21154820,21154904-21155008,21155935-21156180
Length = 753
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 350 TIHGGCLPVHLETHQIKMNLQRTQIKLKSSRNPLEHVPPXH-DPLQNELEQ 499
TI G LP ++ +N+ Q KSS +P H PP H +N+ +Q
Sbjct: 678 TITSGFLPTIMDIITAVINMSHNQ---KSSSHPPRHRPPLHPQSFRNQAQQ 725
>06_01_0063 - 534138-534605
Length = 155
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 641 LEFNTHLTGVHPSQKPFRCQICLEPFHKKSHLRR 742
L F+ + + P C +CL FHK + +RR
Sbjct: 74 LRFDALSSSLQPPLHVATCAVCLRDFHKSAQVRR 107
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Frame = +2
Query: 608 CPHCRKSYPTILEFNTHLTGVHPSQ-----KPFRCQICLEPFHKKSHLRRHLDALH 760
C C + + H T VH + + + C +C++ F + L RH+ H
Sbjct: 465 CKICSQEFSDDQGLGLHWTEVHKKEVRWLFRGYSCAVCMDSFTNRRVLERHVQEKH 520
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,563,688
Number of Sequences: 37544
Number of extensions: 449494
Number of successful extensions: 1067
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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