Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_O14
(1146 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 33 0.42
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 33 0.56
04_03_0904 + 20717005-20718087 30 3.9
02_05_0686 - 30900748-30902167,30903442-30904742 30 3.9
11_06_0610 - 25449085-25453284 29 5.2
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 29 5.2
08_01_0059 - 394001-394708 29 9.1
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 33.1 bits (72), Expect = 0.42
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = +3
Query: 486 PDAXLPQSYXGSPXNPXPRXLEXGPPKRXPAPXXXPXPXDTRXQXSPXXVTPGPXXLXER 665
P LP SP P P P + P P P P P P P L R
Sbjct: 590 PPPPLPNCLVPSPPPPPPPP-PILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNR 648
Query: 666 XXPXPPXXXXG 698
P PP G
Sbjct: 649 LVPPPPAPGIG 659
Score = 29.1 bits (62), Expect = 6.9
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +3
Query: 522 PXNPXPRXLEXGPPKRXPAPXXXPXPXDTRXQXSPXXVTPGPXXLXERXXPXPP 683
P P P + P P P P SP P P L R P PP
Sbjct: 568 PPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPP 621
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 32.7 bits (71), Expect = 0.56
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = +3
Query: 465 PSXRXICPDAXLPQSYXGSPX-NPXPRXLEXGPPKRXPAPXXX-PXPXDTRXQXSPXXVT 638
PS I P P+ P P P + PP P+P P P + SP VT
Sbjct: 521 PSPPEITPYPSPPEIVPSPPEIAPSPPIVTPMPPIIYPSPPEVTPSPPEITPYPSPPEVT 580
Query: 639 PGPXXLXERXXPXPP 683
PGP + P PP
Sbjct: 581 PGPPEI--TPYPSPP 593
Score = 30.3 bits (65), Expect = 3.0
Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Frame = +3
Query: 465 PSXRXICPDAXLPQSYXGSPX---NPXPRXLEXGPPKRXP---APXXXPXPXDTRXQXSP 626
PS I P P+ G P P P + PP+ P P P P SP
Sbjct: 565 PSPPEITPYPSPPEVTPGPPEITPYPSPPEITPSPPEITPYPSPPEVVPSPPKITPYPSP 624
Query: 627 XXVTPGPXXLXERXXPXPP 683
VTP P + P PP
Sbjct: 625 PEVTPSPPEI--TPYPSPP 641
Score = 29.1 bits (62), Expect = 6.9
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Frame = +3
Query: 531 PXPRXLEXGPPKRXP---APXXXPXPXDTRXQXSPXXVTPGPXXLXERXXPXPP 683
P P + PP+ P P P P + SP V PGP + P PP
Sbjct: 450 PSPPEIVPSPPEITPYPSPPEIVPSPPEITPYPSPPEVVPGPPEI--NPYPSPP 501
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.9 bits (64), Expect = 3.9
Identities = 17/66 (25%), Positives = 20/66 (30%)
Frame = +3
Query: 486 PDAXLPQSYXGSPXNPXPRXLEXGPPKRXPAPXXXPXPXDTRXQXSPXXVTPGPXXLXER 665
P P +Y +P P+ PP P P P P TP P
Sbjct: 234 PKPNPPPTYKPAPPTYKPQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTPT 293
Query: 666 XXPXPP 683
P PP
Sbjct: 294 PKPNPP 299
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 3.9
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = +3
Query: 522 PXNPXPRXLEXGPPKRXPAPXXXPXPXDTRXQXSPXXVTPGPXXLXERXXPXPPXXXXGK 701
P P P+ PP P P P P P P + P PP GK
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
Query: 702 TCG 710
G
Sbjct: 374 KGG 376
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 5.2
Identities = 18/63 (28%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Frame = +3
Query: 501 PQSYXGSPXNPXPRXLEXGPPKRXPAPXXXP--XPXDTRXQXSPXXVTPGPXXLXERXXP 674
P+S SP P P PPK P P P +P TP P
Sbjct: 720 PESEASSPPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEEYTPSPPKSSPPEEK 779
Query: 675 XPP 683
PP
Sbjct: 780 SPP 782
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/50 (28%), Positives = 18/50 (36%)
Frame = +3
Query: 531 PXPRXLEXGPPKRXPAPXXXPXPXDTRXQXSPXXVTPGPXXLXERXXPXP 680
P P + GP + P P P P + P PGP + P P
Sbjct: 167 PSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGP 216
>08_01_0059 - 394001-394708
Length = 235
Score = 28.7 bits (61), Expect = 9.1
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +3
Query: 558 PPKRXPAPXXXPXPXDTRXQXSP-XXVTPGPXXLXERXXPXPP 683
PP+R P P P P R P + P P P PP
Sbjct: 6 PPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,481,624
Number of Sequences: 37544
Number of extensions: 160600
Number of successful extensions: 489
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3479804408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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