Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O13
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    33   0.37 
AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase assoc...    33   0.37 
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    29   6.1  

>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
            protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 804  PKXPLXPPPGPXXPPXKFFFXXXPPP 881
            P  P  PPP P  PP  FF    PPP
Sbjct: 1006 PAGPGGPPPPPPPPPADFFANIAPPP 1031


>AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform b protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 804 PKXPLXPPPGPXXPPXKFFFXXXPPP 881
           P  P  PPP P  PP  FF    PPP
Sbjct: 245 PAGPGGPPPPPPPPPADFFANIAPPP 270


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/59 (28%), Positives = 17/59 (28%)
 Frame = +3

Query: 714 PPXXXXXXXXAPPKKNPFXXGXPGLXKXWXPKXPLXPPPGPXXPPXKFFFXXXPPPXFS 890
           PP         PP   P                P  PPP P  PP  F F    P  FS
Sbjct: 540 PPPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVPGGPPPPPPPPPPSFMFNGKVPNAFS 598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,648,553
Number of Sequences: 27780
Number of extensions: 155576
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)