Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O12
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.026
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 430 PPPXXGGXXPPPXKKXXXXXGPPPPP 507
           P P  GG  PPP        GPPPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
 Frame = +3

Query: 783 PPPPXGXXXPPPXXGXXP---KKXFXXXPXPPXPXXGXXXXFXXPPPP 917
           PPPP     P P     P          P PP P  G       PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 676 PPPPXXXGXFXXPPPXPPP 732
           PPPP   G    PPP PPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 676 PPPPXXXGXFXXPPPXPPP 732
           PPPP        PPP PPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 676 PPPPXXXGXFXXPPPXPPP 732
           PPPP   G     PP PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +1

Query: 670 KXPPPPXXXGXFXXPPPXPPPXXKXXXXXXXXXXXXXXPPPXGGXXXPPP 819
           K PPPP        P P P P                 PPP      PPP
Sbjct: 730 KSPPPPPP--AVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +1

Query: 424 GXPPPXXGGXXPPPXKKXXXXXGPPPPPKXXKK 522
           G PPP      PPP  +      PPPPP   KK
Sbjct: 7   GNPPPPP----PPPGFEPPSQPPPPPPPGYVKK 35



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 676 PPPPXXXGXFXXPPPXPPP 732
           PPPP        PPP PPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 23/80 (28%), Positives = 23/80 (28%)
 Frame = -1

Query: 728 GGXGGGXKXXPXXXGGGGXFXXXXXPPPXPPXXXKXXKXKXGGGXXFXXGXXGGXXXXXG 549
           GG GGG    P   GG G F                     GGG     G  GG     G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGE-----GHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245

Query: 548 XXXFXKXXFFXXXXGGGGGP 489
                   F     G GGGP
Sbjct: 246 GFGGGLGGFGGGPGGFGGGP 265


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 26/134 (19%), Positives = 27/134 (20%), Gaps = 5/134 (3%)
 Frame = +1

Query: 430 PPPXXGGXXPPPXKKXXXXXGPPPPPKXXKKXXFXXKXXXPXXXXXPPXXPXXK-----X 594
           PPP       PP          PPPP   +          P     PP  P         
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374

Query: 595 XPPPXXXFXXFXXXGGXGGGXXXXKKXPPPPXXXGXFXXPPPXPPPXXKXXXXXXXXXXX 774
            PPP                         PP         PP P P              
Sbjct: 375 QPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPS 434

Query: 775 XXXPPPXGGXXXPP 816
                P G    PP
Sbjct: 435 APPSLPMGAPAAPP 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,117
Number of Sequences: 5004
Number of extensions: 43754
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)