Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O09
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.51 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 565 PKKXPPPXGXGGXXXGXPPPPP 630
           P   PPP G  G     PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 575 PPPPXXXGGXXXXPPLPPP 631
           PPPP   G     PP PPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 555 PPPPPPPXG 529
           PPPPPPP G
Sbjct: 761 PPPPPPPPG 769


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +1

Query: 802 PKXPPPXTXXKXPPPXGGGXPXXGXKAXPPP 894
           P  PPP    +  PP G G         PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 559 SXPKKXPPPXGXGGXXXGXPPPPP 630
           S   +  PP G G      PPPPP
Sbjct: 318 SRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 545 GGGGXXXQKXPPPPXXXGGXXXXPPLPPPXKXTP 646
           G G       PPPP          PLPP  +  P
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
 Frame = +1

Query: 754  PXXGPP--PKXXGXSRXXPKXPPPXTXXKXPPPXGGGXPXXGXKAXPPP 894
            P   PP  P+     +     PPP      PPP     P     A PPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/54 (33%), Positives = 18/54 (33%)
 Frame = -1

Query: 628 GGEGGXXXXPPXXPGGGGXFLGXXXXXXXXPXGXXXKGGLGXXXFFXPPFXXGP 467
           GG GG    PP  PGG G F G               GG G        F  GP
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = -3

Query: 893 GGGXALXPXXGXPPPXGGGFFXXVXGGGXFGXXRLXPXFFGGGP 762
           GG        G PPP G G F    G G  G        FGGGP
Sbjct: 188 GGFGGFGGGSGGPPP-GPGGFGGFGGFGGEGHHHGGHGGFGGGP 230


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = +1

Query: 754  PXXGPP-PKXXGXSRXXPKXPPPXTXXKXPPPXGGGXPXXGXKAXPPP 894
            P   PP PK    S   P  PPP T    P P  G  P     A  PP
Sbjct: 1194 PSEAPPVPKP---SVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 600 PPXXXGGGGFFWXXXPPPPPPP 535
           PP      GF     PPPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 565 PKKXPPPXGXGGXXXGXPPPPP 630
           P   PPP G        PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 555 PPPPPPPXG 529
           PPPPPPP G
Sbjct: 9   PPPPPPPPG 17


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.150    0.527 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,292
Number of Sequences: 5004
Number of extensions: 20354
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)