Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O09
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.10 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect(2) = 0.10
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 567  WXXXPPPPPPP 535
            W    PPPPPP
Sbjct: 1350 WRQQQPPPPPP 1360



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 555  PPPPPPP 535
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 555  PPPPPPP 535
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.6 bits (46), Expect(2) = 0.10
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 555  PPPPPPPXG 529
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +1

Query: 565 PKKXPPPXGXGGXXXGXPPPPPXKTXP 645
           P++  PP    G   G PP  P    P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.150    0.527 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,871
Number of Sequences: 438
Number of extensions: 4338
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)