Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O08
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    31   0.29 
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    29   1.2  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    28   2.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   6.3  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   8.3  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    26   8.3  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   8.3  
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ...    26   8.3  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   8.3  

>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +1

Query: 547 ETEKQEDG*ESIENHESEYEKTVERQNXXXXXXXXAEKKKTKSSKDAQTPAKKKSMLMRR 726
           ET + +D   SI + E+E E+T + ++           K+T   K A+    K+    +R
Sbjct: 442 ETSESDDDANSISSMENEEERTSDSKSSAKQGKGNGRAKETPEEKRARKKKTKEDKAEKR 501

Query: 727 KS 732
           KS
Sbjct: 502 KS 503


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 532 ERENRETEKQEDG*ESIENHESE 600
           E ENRE  +   G ES+EN ESE
Sbjct: 644 ENENRELSEDYSGDESLENSESE 666


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 611 PSKDKMAAGEVADAPKRKKQNRPKTRKLPPK 703
           P +DK +AGEV D   +++QN   ++   P+
Sbjct: 239 PKRDKRSAGEVQDEIMKRRQNSSISQAATPR 269


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -2

Query: 192 SWIMSFVLFFSIKTSAV----WMVCFFFFAVALGKGV 94
           S I++ VL F + T AV     M+CFFF+ ++   G+
Sbjct: 109 SSILAQVLLFFMTTGAVRRYSMMLCFFFWRISYDAGI 145


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 575 NQLKITKANTKKPSKD-KMAAG-EVADAPKRKKQNRPKTRKLPPKRSP 712
           + L + KA  K P K  +   G + +  P+ +++   KTRK P KRSP
Sbjct: 273 HNLSLNKAFRKVPRKSGEQGKGMKWSIVPEFREEFIAKTRKTPRKRSP 320


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
 Frame = +1

Query: 115 SKEEK---TNHPNRRSLDRE----EKNKRHDPRGSRRTED*KR 222
           SKEE    T+H NRR   RE    +  +R+  R SR T D KR
Sbjct: 152 SKEESKTVTDHSNRRESRRESTYYDSRERNGKRTSRSTLDRKR 194


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 563 KTDENQLKITKANTKKPSKDKMAAGEVADAPKRK 664
           K D +QL ITKA +K     KMA  E+A+  +++
Sbjct: 860 KIDMSQLVITKALSKTDYAAKMAHVELAERMRKR 893


>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 127 KTNHPNRRSLDREEKNKRHDPRGSRRTE 210
           K++H NR+ + +E    R DP   RR E
Sbjct: 24  KSSHENRKEVVQEHSRMRIDPALERRLE 51


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 636 ERSRTRRKEKNKIVQRRANSRQKEVHADEKEKHRE 740
           +R +  ++E +K++Q R     +++HA    KH +
Sbjct: 301 QRGKYTQEEVDKLIQERMEKVAEDLHAQYSAKHTQ 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,561
Number of Sequences: 5004
Number of extensions: 42010
Number of successful extensions: 212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)